C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK2 homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000351817 NKX2-4-001 ENSG00000125816 9606 - 20:21395367-21398028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainTestisENST00000351817
Transcript ID Brain Testis
ENST00000351817 0.493±0.00 1.940±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097L CIL_00097L_0001 VISTA 20:20934152-21536594
CIL_0008VN CIL_0008VN_0001 VISTA 20:21207913-21809383
CIL_0003QC CIL_0003QC_0001 CGP 20:21303304-21398028
CIL_0006WU CIL_0006WU_0001 CGP 20:21395367-21514026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0008150 ND biological_process
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067020 Nkx2-4-001 protein_coding Mus_musculus 0 1624
ENSMUST00000001536 Nkx2-1-002 protein_coding Mus_musculus 0 337
ENSMUST00000178477 Nkx2-1-001 protein_coding Mus_musculus 0 337
ENSDART00000007829 nkx2.1a-001 protein_coding Danio_rerio 0 217
ENSMUST00000067075 Nkx2-2-002 protein_coding Mus_musculus 0 207
ENSMUST00000109970 Nkx2-2-001 protein_coding Mus_musculus 0 207
ENSMUST00000015723 Nkx2-5-001 protein_coding Mus_musculus 0 202
ENSMUST00000072631 Nkx2-9-001 protein_coding Mus_musculus 2e-28 132
ENSDART00000005296 nkx2.9-001 protein_coding Danio_rerio 0.000000000000001 90
ENSDART00000153363 protein_coding Danio_rerio 0.000000005 68

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