C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000788_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000198743-ENSG00000159197 CGP 9606 21:34073570-34371389
GeneTranscriptPositionBiotype
ENSG00000159197 (KCNE2)
potassium voltage-gated channel, Isk-related family, member 2 		ENST00000290310 (KCNE2-001) 34364024-34371389 protein_coding
ENSG00000198743 (SLC5A3)
solute carrier family 5 (sodium/myo-inositol cotransporter), member 3 		ENST00000381151 (SLC5A3-001) 34073570-34106260 protein_coding
ENSG00000224598 (RPS5P2)
ribosomal protein S5 pseudogene 2 		ENST00000415238 (RPS5P2-001) 34135432-34136071 processed_pseudogene
ENSG00000225555 (AP000320.6)
 ENST00000440403 (AP000320.6-001) 34370802-34375348 antisense
ENSG00000227456 (LINC00310)
long intergenic non-protein coding RNA 310 		ENST00000416145 (LINC00310-002) 34180744-34188562 lincRNA
ENST00000419881 (LINC00310-003) 34180760-34189197 lincRNA
ENST00000428914 (LINC00310-001) 34180677-34183245 lincRNA
ENST00000430922 (LINC00310-004) 34180748-34189922 lincRNA
ENST00000609062 (LINC00310-006) 34180715-34189066 lincRNA
ENST00000609947 (LINC00310-005) 34180729-34189183 lincRNA
ENST00000619549 (LINC00310-007) 34185866-34188877 lincRNA
ENSG00000243927 (MRPS6)
mitochondrial ribosomal protein S6 		ENST00000399312 (MRPS6-001) 34073523-34143034 protein_coding
ENST00000477091 (MRPS6-004) 34073549-34143034 processed_transcript
ENST00000482679 (MRPS6-003) 34123953-34143034 processed_transcript
ENST00000483977 (MRPS6-002) 34122174-34143034 retained_intron
ENST00000488492 (MRPS6-005) 34073224-34143034 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_000788_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000089774-ENSMUSG00000039672 CGP 10090 16:92058322-92298129
GeneTranscriptPositionBiotype
ENSMUSG00000039672 (Kcne2)
potassium voltage-gated channel, Isk-related subfamily, gene 2 		ENSMUST00000047383 (Kcne2-001) 92292389-92298129 protein_coding
ENSMUST00000113971 (Kcne2-002) 92295616-92298129 protein_coding
ENSMUSG00000039680 (Mrps6)
mitochondrial ribosomal protein S6 		ENSMUST00000047429 (Mrps6-001) 92058270-92112227 protein_coding
ENSMUST00000138961 (Mrps6-003) 92106261-92112227 processed_transcript
ENSMUSG00000086331 (Gm16310)
predicted gene 16310 		ENSMUST00000124376 (Gm16310-001) 92094568-92096490 sense_intronic
ENSMUSG00000089774 (Slc5a3)
solute carrier family 5 (inositol transporters), member 3 		ENSMUST00000113975 (Slc5a3-001) 92058322-92087473 protein_coding
ENSMUST00000131098 (Slc5a3-002) 92078062-92083808 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000788_0001ENSG00000159197ENST00000290310ENSG00000198743ENST00000381151ENSG00000224598ENST00000415238ENSG00000225555ENST00000440403ENSG00000227456ENST00000416145ENST00000419881ENST00000428914ENST00000430922ENST00000609062ENST00000609947ENST00000619549ENSG00000243927ENST00000399312ENST00000477091ENST00000482679ENST00000483977ENST00000488492CIL_000788_0002ENSMUSG00000039672ENSMUST00000047383ENSMUST00000113971ENSMUSG00000039680ENSMUST00000047429ENSMUST00000138961ENSMUSG00000086331ENSMUST00000124376ENSMUSG00000089774ENSMUST00000113975ENSMUST00000131098
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000788_0001ENSG00000159197ENST00000290310ENSG00000198743ENST00000381151ENSG00000224598ENST00000415238ENSG00000225555ENST00000440403ENSG00000227456ENST00000416145ENST00000419881ENST00000428914ENST00000430922ENST00000609062ENST00000609947ENST00000619549ENSG00000243927ENST00000399312ENST00000477091ENST00000483977CIL_000788_0002ENSMUSG00000039672ENSMUST00000047383ENSMUST00000113971ENSMUSG00000039680ENSMUST00000047429ENSMUSG00000086331ENSMUST00000124376ENSMUSG00000089774ENSMUST00000113975
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000159197 ENST00000290310 0.034±0.00 0.046±0.00 N/A 0.281±0.00 0.211±0.01 0.052±0.00 N/A 0.226±0.00 0.089±0.00 N/A N/A 0.127±0.02 0.035±0.01 0.378±0.09
ENSG00000198743 ENST00000381151 5.018±0.00 0.844±0.00 25.736±0.00 2.268±1.13 6.340±2.13 4.766±2.10 0.808±0.19 4.237±0.00 3.565±2.46 4.101±3.08 0.449±0.03 2.534±2.17 2.377±1.03 3.939±1.12
ENSG00000224598 ENST00000415238 0.027±0.00 N/A 1.543±0.00 0.032±0.00 0.248±0.00 0.386±0.00 N/A N/A 0.026±0.00 N/A N/A 0.267±0.00 N/A 0.102±0.03
ENSG00000225555 ENST00000440403 0.308±0.00 0.184±0.00 N/A 0.643±0.00 0.120±0.00 0.168±0.00 0.055±0.00 0.425±0.00 0.206±0.00 N/A 0.052±0.00 0.197±0.13 0.099±0.00 2.755±0.10
ENSG00000227456 ENST00000416145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.166±0.00 N/A N/A N/A
ENST00000419881 N/A N/A 0.907±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428914 0.269±0.00 0.287±0.00 N/A 0.230±0.00 1.539±0.00 N/A N/A N/A N/A 0.192±0.00 N/A 0.108±0.00 0.057±0.02 0.126±0.09
ENST00000430922 N/A N/A 0.194±0.00 0.073±0.00 N/A 0.044±0.00 N/A N/A 0.274±0.21 N/A N/A 0.181±0.02 N/A N/A
ENST00000609062 N/A N/A 0.274±0.00 N/A N/A N/A 0.231±0.00 N/A N/A 0.032±0.00 N/A N/A N/A N/A
ENST00000609947 0.075±0.00 N/A N/A N/A 0.299±0.00 0.292±0.20 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000619549 N/A N/A N/A 0.047±0.00 0.384±0.00 N/A N/A 0.537±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000243927 ENST00000399312 30.448±0.00 22.506±0.00 N/A 15.547±4.74 38.400±0.00 47.139±0.00 21.496±0.00 47.209±35.02 22.352±0.00 26.516±0.00 10.914±2.74 29.679±14.70 43.583±10.09 30.509±20.67
ENST00000477091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.299±0.00
ENST00000482679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.608±0.00 N/A N/A
ENST00000488492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039672 ENSMUST00000047383 0.131±0.03 N/A N/A 4.890±3.19 N/A 0.719±0.10 N/A N/A N/A 12.690±0.35 N/A 0.894±0.51 0.115±0.08 0.012±0.00
ENSMUST00000113971 0.164±0.00 0.279±0.15 0.101±0.00 N/A 0.133±0.07 0.541±0.08 0.023±0.00 0.166±0.09 0.053±0.02 N/A 0.024±0.00 0.147±0.00 0.096±0.03 0.254±0.06
ENSMUSG00000039680 ENSMUST00000047429 67.493±29.96 27.669±2.67 29.866±3.05 27.421±10.77 26.440±6.49 31.144±3.91 20.580±3.47 67.449±6.83 10.706±3.87 10.397±0.94 11.433±1.49 19.678±6.81 90.145±26.38 11.140±1.44
ENSMUST00000138961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000086331 ENSMUST00000124376 0.548±0.06 0.123±0.01 0.423±0.04 0.748±0.27 0.261±0.10 0.234±0.13 0.069±0.02 0.814±0.40 0.145±0.07 0.241±0.03 0.096±0.05 0.449±0.27 1.234±0.38 0.212±0.07
ENSMUSG00000089774 ENSMUST00000113975 8.029±2.54 4.012±0.64 0.763±0.24 2.179±0.91 4.413±1.20 3.593±0.43 0.644±0.04 10.389±2.25 0.469±0.11 1.262±0.14 0.224±0.03 3.346±0.86 3.677±1.12 1.481±0.61
ENSMUST00000131098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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