C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S5 pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000415238 RPS5P2-001 ENSG00000224598 9606 - 21:34135432-34136071 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverOvaryTestisENST00000415238
Transcript ID Adipose Bladder Brain Breast Colon Liver Ovary Testis
ENST00000415238 0.027±0.00 1.543±0.00 0.032±0.00 0.248±0.00 0.386±0.00 0.026±0.00 0.267±0.00 0.102±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000789 CIL_000789_0001 CGP 21:34073224-34143034
CIL_000788 CIL_000788_0001 CGP 21:34073570-34371389

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004554 Rps5-001 protein_coding Mus_musculus 0 492
ENSMUST00000108539 Rps5-002 protein_coding Mus_musculus 0 492
ENSMUST00000137329 Rps5-004 protein_coding Mus_musculus 0 409
ENSMUST00000147435 Rps5-003 protein_coding Mus_musculus 0 409
ENSMUST00000139349 Rps5-006 retained_intron Mus_musculus 0 331

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