C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_00078I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000205423-ENSG00000155393 CGP 9606 16:50024410-50106387
GeneTranscriptPositionBiotype
ENSG00000155393 (HEATR3)
HEAT repeat containing 3
ENST00000299192 (HEATR3-001) 50065941-50106387 protein_coding
ENST00000561525 (HEATR3-007) 50078944-50084620 retained_intron
ENST00000561819 (HEATR3-005) 50065996-50070238 processed_transcript
ENST00000564942 (HEATR3-006) 50080032-50094805 processed_transcript
ENST00000569324 (HEATR3-004) 50066006-50066848 retained_intron
ENSG00000202124 (RNY4P3)
RNA, Ro-associated Y4 pseudogene 3
ENST00000365254 (RNY4P3-201) 50098264-50098358 misc_RNA
ENSG00000260298 (RP11-429P3.4)
ENST00000564713 (RP11-429P3.4-001) 50058150-50059231 transcribed_processed_pseudogene
ENSG00000273829 (Metazoa_SRP)
Metazoan signal recognition particle RNA
ENST00000611402 (Metazoa_SRP.1-246) 50054143-50054430 misc_RNA
ENSG00000279356 (RP11-429P3.8)
ENST00000623307 (RP11-429P3.8-001) 50072862-50074986 TEC
CIL_00078I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036810-ENSMUSG00000031657 CGP 10090 8:88118769-88172027
GeneTranscriptPositionBiotype
ENSMUSG00000031657 (Heatr3)
HEAT repeat containing 3
ENSMUST00000034079 (Heatr3-001) 88137855-88172027 protein_coding
ENSMUST00000121949 (Heatr3-002) 88137856-88171997 protein_coding
ENSMUST00000131682 (Heatr3-004) 88157065-88158745 retained_intron
ENSMUST00000137452 (Heatr3-005) 88164482-88167045 retained_intron
ENSMUST00000146946 (Heatr3-003) 88161518-88172027 retained_intron
ENSMUSG00000036810 (Cnep1r1)
CTD nuclear envelope phosphatase 1 regulatory subunit 1
ENSMUST00000095214 (Cnep1r1-001) 88118769-88135106 protein_coding
ENSMUST00000117775 (Cnep1r1-005) 88118807-88131070 protein_coding
ENSMUST00000121097 (Cnep1r1-003) 88118800-88131687 protein_coding
ENSMUST00000127490 (Cnep1r1-002) 88118787-88135110 nonsense_mediated_decay
ENSMUST00000128290 (Cnep1r1-004) 88118800-88134480 retained_intron
ENSMUST00000131891 (Cnep1r1-006) 88118778-88130854 processed_transcript
ENSMUSG00000055968 (Gm9988)
predicted gene 9988
ENSMUST00000069786 (Gm9988-201) 88138079-88138517 pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078I_0001ENSG00000155393ENST00000299192ENST00000561525ENST00000561819ENST00000564942ENST00000569324ENSG00000202124ENST00000365254ENSG00000260298ENST00000564713ENSG00000273829ENST00000611402ENSG00000279356ENST00000623307CIL_00078I_0002ENSMUSG00000031657ENSMUST00000034079ENSMUST00000121949ENSMUST00000131682ENSMUST00000137452ENSMUST00000146946ENSMUSG00000036810ENSMUST00000095214ENSMUST00000117775ENSMUST00000121097ENSMUST00000127490ENSMUST00000128290ENSMUST00000131891ENSMUSG00000055968ENSMUST00000069786
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00078I_0001ENSG00000155393ENST00000299192ENSG00000202124ENST00000365254ENSG00000260298ENST00000564713ENSG00000273829ENST00000611402ENSG00000279356ENST00000623307CIL_00078I_0002ENSMUSG00000031657ENSMUST00000034079ENSMUST00000121949ENSMUST00000146946ENSMUSG00000036810ENSMUST00000095214ENSMUST00000121097ENSMUST00000127490ENSMUST00000128290ENSMUST00000131891ENSMUSG00000055968ENSMUST00000069786
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155393 ENST00000299192 1.792±0.00 2.515±0.00 0.750±0.00 1.262±0.09 1.269±0.85 1.680±0.33 1.632±0.96 3.333±1.12 2.229±0.93 1.603±0.76 3.103±1.06 3.250±1.34 3.059±0.30 2.524±0.06
ENST00000561525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202124 ENST00000365254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.031±0.00 N/A N/A
ENSG00000260298 ENST00000564713 N/A 0.125±0.00 N/A N/A 0.023±0.00 0.042±0.00 0.062±0.00 0.022±0.00 N/A N/A 0.018±0.00 N/A N/A 0.106±0.00
ENSG00000273829 ENST00000611402 0.289±0.00 2.439±0.00 N/A 0.867±0.00 0.315±0.00 0.749±0.00 0.171±0.00 1.301±0.00 0.375±0.00 0.231±0.00 N/A 0.666±0.00 N/A 0.887±0.00
ENSG00000279356 ENST00000623307 0.152±0.00 0.491±0.00 0.210±0.00 0.262±0.20 0.383±0.20 0.350±0.33 0.117±0.05 0.083±0.06 0.034±0.01 0.177±0.15 0.052±0.00 0.166±0.20 0.030±0.01 0.143±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031657 ENSMUST00000034079 12.377±1.62 10.672±2.46 9.174±1.17 11.352±4.99 8.569±0.52 5.293±0.47 7.880±1.60 7.219±0.62 10.775±3.81 7.190±0.15 11.207±3.63 8.817±4.34 10.023±4.93 2.350±1.13
ENSMUST00000121949 N/A N/A N/A 2.743±0.00 11.213±0.00 N/A N/A N/A N/A N/A 3.262±0.07 7.572±1.54 6.064±3.45 1.307±0.00
ENSMUST00000131682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146946 N/A N/A N/A 3.434±0.00 N/A N/A 1.708±0.00 2.698±0.79 N/A N/A N/A 2.290±0.26 3.786±1.53 N/A
ENSMUSG00000036810 ENSMUST00000095214 12.121±3.59 9.119±1.19 16.947±3.00 12.235±5.86 9.025±2.14 8.594±1.38 8.003±0.52 12.731±1.13 12.343±3.95 13.802±1.38 11.864±1.38 7.811±4.57 13.170±6.20 9.232±4.37
ENSMUST00000117775 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000121097 2.758±0.04 1.064±0.41 2.665±0.31 3.626±0.10 1.190±0.11 1.231±0.26 N/A 1.638±0.16 1.950±0.99 1.819±0.26 N/A 1.929±1.01 2.710±0.54 1.572±0.20
ENSMUST00000127490 N/A 3.664±0.00 N/A N/A 3.000±0.46 2.135±0.00 4.834±0.83 N/A N/A 2.722±0.00 4.302±0.97 3.627±1.07 1.576±0.00 N/A
ENSMUST00000128290 2.929±0.32 1.241±0.29 N/A N/A 2.600±0.00 2.046±0.00 N/A N/A 1.288±0.00 N/A N/A 1.703±0.68 N/A 0.641±0.00
ENSMUST00000131891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.270±0.00 8.486±0.57 N/A
ENSMUSG00000055968 ENSMUST00000069786 N/A 5.440±0.47 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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