C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564713 RP11-429P3.4-001 ENSG00000260298 9606 - 16:50058150-50059231 transcribed_processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyMuscleTestisENST00000564713
Transcript ID Adrenal Breast Colon Heart Kidney Muscle Testis
ENST00000564713 0.125±0.00 0.023±0.00 0.042±0.00 0.062±0.00 0.022±0.00 0.018±0.00 0.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00078I CIL_00078I_0001 CGP 16:50024410-50106387

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 436
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 436
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 436
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 385
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 375
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 375
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 368
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 368
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 346
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 339
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 339
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 339
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 333
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 327
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 303
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 294
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 292
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 274
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 274
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 263
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 255
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 255
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 255
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 255
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 239
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 239
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 233
ENSDART00000080664 protein_coding Danio_rerio 0 207
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 200
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 191
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 4e-37 159
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 4e-37 159
ENSMUST00000124933 Actg2-006 processed_transcript Mus_musculus 2e-35 154
ENSDART00000141407 actb1-002 protein_coding Danio_rerio 2e-30 137
ENSDART00000148067 actb1-003 processed_transcript Danio_rerio 9e-29 132
ENSDART00000138324 actb1-004 protein_coding Danio_rerio 0.00000000000002 84

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