C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00079Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157600-ENSG00000101935 CGP 9606 X:110002631-110440233
GeneTranscriptPositionBiotype
ENSG00000101935 (AMMECR1)
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 		ENST00000262844 (AMMECR1-001) 110194186-110318239 protein_coding
ENST00000372057 (AMMECR1-002) 110196410-110440233 protein_coding
ENST00000372059 (AMMECR1-005) 110196372-110318084 protein_coding
ENST00000473662 (AMMECR1-003) 110219480-110317771 processed_transcript
ENST00000496695 (AMMECR1-004) 110309150-110317756 processed_transcript
ENSG00000133136 (GNG5P2)
guanine nucleotide binding protein (G protein), gamma 5 pseudogene 2 		ENST00000372054 (GNG5P2-001) 110346703-110346909 processed_pseudogene
ENSG00000157600 (TMEM164)
transmembrane protein 164 		ENST00000288381 (TMEM164-001) 110003115-110177788 protein_coding
ENST00000372068 (TMEM164-201) 110003114-110177784 protein_coding
ENST00000372072 (TMEM164-202) 110002635-110177784 protein_coding
ENST00000372073 (TMEM164-003) 110003095-110177788 protein_coding
ENST00000461715 (TMEM164-006) 110065101-110171511 processed_transcript
ENST00000464177 (TMEM164-007) 110144855-110182734 processed_transcript
ENST00000471255 (TMEM164-004) 110002687-110067396 processed_transcript
ENST00000497754 (TMEM164-005) 110002631-110003594 processed_transcript
ENSG00000224142 (AMMECR1-IT1)
AMMECR1 intronic transcript 1 (non-protein coding) 		ENST00000418848 (AMMECR1-IT1-001) 110305420-110307221 sense_intronic
ENSG00000243978 (RGAG1)
retrotransposon gag domain containing 1 		ENST00000465301 (RGAG1-001) 110419057-110456334 protein_coding
ENST00000520821 (RGAG1-003) 110358816-110450881 protein_coding
ENST00000540313 (RGAG1-201) 110450565-110456326 protein_coding
ENSG00000265584 (MIR3978)
microRNA 3978 		ENST00000585195 (MIR3978-201) 110082118-110082218 miRNA
CIL_00079Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047045-ENSMUSG00000042225 CGP 10090 X:142681406-142966728
GeneTranscriptPositionBiotype
ENSMUSG00000042225 (Ammecr1)
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 		ENSMUST00000041317 (Ammecr1-001) 142851146-142966728 protein_coding
ENSMUSG00000047045 (Tmem164)
transmembrane protein 164 		ENSMUST00000087333 (Tmem164-001) 142681418-142838238 protein_coding
ENSMUST00000101198 (Tmem164-005) 142681415-142838238 protein_coding
ENSMUST00000112888 (Tmem164-008) 142825741-142838238 protein_coding
ENSMUST00000112889 (Tmem164-003) 142681406-142843494 protein_coding
ENSMUST00000112891 (Tmem164-004) 142681415-142843494 protein_coding
ENSMUST00000112896 (Tmem164-002) 142681726-142838238 protein_coding
ENSMUST00000124211 (Tmem164-009) 142682888-142771290 retained_intron
ENSMUST00000133634 (Tmem164-007) 142681726-142843494 nonsense_mediated_decay
ENSMUST00000151914 (Tmem164-006) 142770993-142843494 protein_coding
ENSMUSG00000081463 (Gm15049)
predicted gene 15049 		ENSMUST00000120474 (Gm15049-001) 142775885-142776347 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00079Y_0001ENSG00000101935ENST00000262844ENST00000372057ENST00000372059ENST00000473662ENST00000496695ENSG00000133136ENST00000372054ENSG00000157600ENST00000288381ENST00000372068ENST00000372072ENST00000372073ENST00000461715ENST00000464177ENST00000471255ENST00000497754ENSG00000224142ENST00000418848ENSG00000243978ENST00000465301ENST00000520821ENST00000540313ENSG00000265584ENST00000585195CIL_00079Y_0002ENSMUSG00000042225ENSMUST00000041317ENSMUSG00000047045ENSMUST00000087333ENSMUST00000101198ENSMUST00000112888ENSMUST00000112889ENSMUST00000112891ENSMUST00000112896ENSMUST00000124211ENSMUST00000133634ENSMUST00000151914ENSMUSG00000081463ENSMUST00000120474
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00079Y_0001ENSG00000101935ENST00000262844ENST00000372059ENSG00000133136ENST00000372054ENSG00000157600ENST00000288381ENST00000372068ENST00000372072ENST00000372073ENST00000461715ENSG00000224142ENST00000418848ENSG00000243978ENST00000465301ENST00000540313ENSG00000265584ENST00000585195CIL_00079Y_0002ENSMUSG00000042225ENSMUST00000041317ENSMUSG00000047045ENSMUST00000087333ENSMUST00000101198ENSMUST00000112888ENSMUST00000112889ENSMUST00000112896ENSMUST00000133634ENSMUSG00000081463ENSMUST00000120474
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101935 ENST00000262844 0.646±0.00 0.823±0.00 0.459±0.00 0.125±0.00 0.638±0.53 0.368±0.00 0.276±0.14 0.638±0.13 0.331±0.06 0.869±0.62 N/A 1.737±0.42 2.475±0.64 0.418±0.00
ENST00000372057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000372059 N/A N/A 0.368±0.00 N/A 0.471±0.00 0.676±0.00 0.203±0.00 1.168±0.00 N/A N/A 0.557±0.00 N/A N/A N/A
ENST00000473662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000133136 ENST00000372054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.089±0.00 N/A N/A 0.187±0.00
ENSG00000157600 ENST00000288381 2.239±0.00 0.747±0.00 N/A N/A 2.113±0.00 N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A 0.298±0.00
ENST00000372068 N/A N/A 1.284±0.00 1.048±0.02 2.476±1.64 1.733±0.00 2.775±1.48 N/A 0.594±0.00 1.824±0.00 1.388±0.00 4.114±2.81 0.753±0.00 N/A
ENST00000372072 3.099±0.00 2.444±0.00 N/A 2.318±0.00 6.982±0.00 2.230±0.00 6.993±0.00 2.302±1.48 0.782±0.00 2.867±0.00 3.582±0.00 5.003±0.38 2.074±0.69 0.871±0.18
ENST00000372073 N/A N/A N/A N/A 0.872±0.00 1.388±0.87 N/A 1.490±0.00 0.613±0.00 0.802±0.00 1.619±0.69 2.459±0.23 1.210±0.10 N/A
ENST00000461715 N/A N/A 2.952±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464177 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497754 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224142 ENST00000418848 0.092±0.00 0.170±0.00 N/A 0.046±0.00 0.154±0.01 0.095±0.00 0.109±0.07 0.104±0.00 0.037±0.00 0.085±0.00 N/A 0.073±0.03 0.107±0.00 0.198±0.09
ENSG00000243978 ENST00000465301 N/A N/A N/A N/A N/A N/A 0.149±0.00 N/A N/A N/A N/A 0.604±0.00 N/A N/A
ENST00000520821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000540313 0.020±0.00 N/A N/A 0.157±0.05 0.033±0.00 0.013±0.01 0.094±0.00 0.009±0.00 0.060±0.00 N/A 0.026±0.00 0.197±0.12 0.281±0.01 2.177±0.42
ENSG00000265584 ENST00000585195 N/A N/A N/A N/A N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042225 ENSMUST00000041317 1.214±0.48 1.018±0.10 1.124±0.10 0.790±0.33 0.532±0.19 1.000±0.25 1.019±0.21 0.216±0.08 1.809±2.16 0.579±0.22 0.574±0.22 1.890±1.02 2.832±0.76 0.403±0.05
ENSMUSG00000047045 ENSMUST00000087333 2.596±0.71 4.318±1.79 3.050±0.50 2.293±0.83 3.851±1.69 11.677±3.27 1.233±0.32 3.555±0.68 2.116±1.23 4.378±0.67 0.200±0.10 6.769±1.18 2.427±1.44 0.319±0.05
ENSMUST00000101198 3.953±1.72 N/A 4.110±1.10 3.006±1.53 2.351±0.64 6.692±0.00 1.428±0.00 2.387±0.49 2.946±2.05 4.768±1.39 0.209±0.10 4.049±0.79 1.880±1.08 0.439±0.32
ENSMUST00000112888 N/A N/A N/A 1.527±0.00 N/A N/A 3.233±0.32 N/A 0.650±0.00 N/A 0.210±0.04 10.986±3.61 2.038±0.18 0.556±0.00
ENSMUST00000112889 N/A 7.812±1.54 N/A N/A 6.218±0.00 N/A N/A N/A 1.363±0.00 N/A N/A N/A N/A N/A
ENSMUST00000112891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000112896 2.724±1.67 6.091±2.10 1.607±0.14 1.078±0.00 3.610±0.62 10.364±2.36 1.443±0.46 2.289±0.28 2.174±1.65 18.696±3.46 N/A 25.640±4.33 0.656±0.04 2.743±0.22
ENSMUST00000124211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133634 N/A 3.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081463 ENSMUST00000120474 0.170±0.05 0.783±0.57 N/A 0.074±0.00 0.210±0.04 0.243±0.00 N/A 0.402±0.09 N/A N/A N/A 0.719±0.35 N/A N/A

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