C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retrotransposon gag domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540313 RGAG1-201 ENSG00000243978 9606 + X:110450565-110456326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000540313
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000540313 0.020±0.00 0.157±0.05 0.033±0.00 0.013±0.01 0.094±0.00 0.009±0.00 0.060±0.00 0.026±0.00 0.197±0.12 0.281±0.01 2.177±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079Y CIL_00079Y_0001 CGP X:110002631-110440233
CIL_00079X CIL_00079X_0001 CGP X:110194186-110456334
CIL_00079W CIL_00079W_0001 CGP X:110358816-110795819

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165829 Rgag1-001 protein_coding Mus_musculus 0 1471

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