C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007A2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000005861-ENSDARG00000079753 CGP 7955 17:41591317-42160969
GeneTranscriptPositionBiotype
ENSDARG00000005861 (ralgapa2)
Ral GTPase activating protein, alpha subunit 2 (catalytic) 		ENSDART00000084745 (ralgapa2-201) 41591317-41914406 protein_coding
ENSDART00000156031 (ralgapa2-001) 41591322-41914572 protein_coding
ENSDARG00000079753 (KIZ)
kizuna centrosomal protein 		ENSDART00000111537 (KIZ-001) 42107843-42160969 protein_coding
ENSDART00000147563 (KIZ-002) 42143685-42160858 protein_coding
ENSDARG00000097749 (si:dkeyp-57d12.1)
si:dkeyp-57d12.1 		ENSDART00000157270 (si:dkeyp-57d12.1-001) 41877999-41879047 lincRNA

Danio rerio Ensembl (Zv9)

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CIL_0007A2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188559-ENSG00000088970 CGP 9606 20:20389552-21246622
GeneTranscriptPositionBiotype
ENSG00000188559 (RALGAPA2)
Ral GTPase activating protein, alpha subunit 2 (catalytic) 		ENST00000202677 (RALGAPA2-008) 20392767-20712488 protein_coding
ENST00000424981 (RALGAPA2-005) 20635351-20640806 retained_intron
ENST00000427175 (RALGAPA2-007) 20470933-20512600 protein_coding
ENST00000430436 (RALGAPA2-002) 20389552-20639900 protein_coding
ENST00000495793 (RALGAPA2-003) 20598784-20605412 processed_transcript
ENST00000620717 (RALGAPA2-201) 20392768-20512658 protein_coding
ENSG00000199509 (RNA5SP477)
RNA, 5S ribosomal pseudogene 477 		ENST00000362639 (RNA5SP477-201) 21138956-21139074 rRNA
ENSG00000213384 (EIF4E2P1)
eukaryotic translation initiation factor 4E family member 2 pseudogene 1 		ENST00000393781 (EIF4E2P1-001) 20659710-20659964 processed_pseudogene
ENSG00000214535 (RPS15AP1)
ribosomal protein S15a pseudogene 1 		ENST00000457423 (RPS15AP1-001) 21166206-21166596 processed_pseudogene
ENSG00000225127 (LINC00237)
long intergenic non-protein coding RNA 237 		ENST00000420705 (LINC00237-002) 21093558-21106334 lincRNA
ENST00000455890 (LINC00237-003) 21092809-21101559 lincRNA
ENST00000593272 (LINC00237-004) 21087604-21106358 lincRNA
ENSG00000225803 (MRPS11P1)
mitochondrial ribosomal protein S11 pseudogene 1 		ENST00000437558 (MRPS11P1-001) 20854121-20854642 processed_pseudogene
ENSG00000234104 (RP5-1177M21.1)
 ENST00000432942 (RP5-1177M21.1-001) 20970448-20972562 lincRNA
ENSG00000235065 (RPL24P2)
ribosomal protein L24 pseudogene 2 		ENST00000421023 (RPL24P2-001) 21114723-21115197 processed_pseudogene
ENSG00000278525 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000461220 (Metazoa_SRP.1-476) 20738433-20738731 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007A2_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037110-ENSMUSG00000074749 CGP 10090 2:146239879-146970097
GeneTranscriptPositionBiotype
ENSMUSG00000042938 (Gm14117)
predicted gene 14117 		ENSMUST00000122417 (Gm14117-001) 146305547-146306389 processed_pseudogene
ENSMUSG00000074749 (Kiz)
kizuna centrosomal protein 		ENSMUST00000099278 (Kiz-001) 146855864-146970097 protein_coding
ENSMUST00000135595 (Kiz-003) 146952883-146970092 retained_intron
ENSMUST00000156232 (Kiz-002) 146855909-146889295 protein_coding
ENSMUSG00000080870 (Gm14111)
predicted gene 14111 		ENSMUST00000119851 (Gm14111-001) 146754707-146755705 processed_pseudogene
ENSMUSG00000085796 (4933406D12Rik)
RIKEN cDNA 4933406D12 gene 		ENSMUST00000147212 (4933406D12Rik-001) 146542931-146546108 lincRNA
ENSMUSG00000087618 (Gm14114)
predicted gene 14114 		ENSMUST00000139345 (Gm14114-001) 146828327-146839732 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007A2_0001ENSDARG00000005861ENSDART00000084745ENSDART00000156031ENSDARG00000079753ENSDART00000111537ENSDART00000147563ENSDARG00000097749ENSDART00000157270CIL_0007A2_0002ENSG00000188559ENST00000202677ENST00000424981ENST00000427175ENST00000430436ENST00000495793ENST00000620717ENSG00000199509ENST00000362639ENSG00000213384ENST00000393781ENSG00000214535ENST00000457423ENSG00000225127ENST00000420705ENST00000455890ENST00000593272ENSG00000225803ENST00000437558ENSG00000234104ENST00000432942ENSG00000235065ENST00000421023ENSG00000278525ENST00000461220CIL_0007A2_0003ENSMUSG00000042938ENSMUST00000122417ENSMUSG00000074749ENSMUST00000099278ENSMUST00000135595ENSMUST00000156232ENSMUSG00000080870ENSMUST00000119851ENSMUSG00000085796ENSMUST00000147212ENSMUSG00000087618ENSMUST00000139345
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007A2_0001ENSDARG00000005861ENSDART00000084745ENSDART00000156031ENSDARG00000079753ENSDART00000111537ENSDARG00000097749ENSDART00000157270CIL_0007A2_0002ENSG00000188559ENST00000202677ENST00000430436ENST00000495793ENSG00000199509ENST00000362639ENSG00000213384ENST00000393781ENSG00000214535ENST00000457423ENSG00000225127ENST00000420705ENST00000455890ENST00000593272ENSG00000225803ENST00000437558ENSG00000234104ENST00000432942ENSG00000235065ENST00000421023ENSG00000278525ENST00000461220CIL_0007A2_0003ENSMUSG00000042938ENSMUST00000122417ENSMUSG00000074749ENSMUST00000099278ENSMUST00000156232ENSMUSG00000080870ENSMUST00000119851ENSMUSG00000085796ENSMUST00000147212ENSMUSG00000087618ENSMUST00000139345
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000005861 ENSDART00000084745 N/A N/A N/A 1.501±0.18 N/A N/A 1.395±1.06 1.356±0.70 0.754±0.00 N/A 0.987±0.00 N/A N/A N/A
ENSDART00000156031 N/A N/A N/A 3.454±2.80 N/A N/A 0.562±0.00 1.634±0.42 0.575±0.00 N/A N/A N/A N/A N/A
ENSDARG00000079753 ENSDART00000111537 N/A N/A N/A 1.681±0.00 N/A N/A 0.749±0.49 1.569±0.00 0.110±0.00 N/A N/A N/A N/A N/A
ENSDART00000147563 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000097749 ENSDART00000157270 N/A N/A N/A 1.044±0.00 N/A N/A 5.500±0.00 N/A 0.198±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000188559 ENST00000202677 N/A 1.476±0.00 2.484±0.00 N/A N/A 3.009±0.00 N/A 3.131±0.00 N/A N/A 1.944±0.00 4.798±0.00 N/A 0.891±0.00
ENST00000424981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000427175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430436 4.480±0.00 2.545±0.00 1.674±0.00 0.471±0.20 3.312±1.65 1.549±0.00 0.449±0.00 4.825±0.69 2.695±0.98 4.826±1.31 2.917±0.00 3.113±2.23 3.190±0.50 2.734±1.13
ENST00000495793 N/A N/A 11.599±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199509 ENST00000362639 N/A 0.224±0.00 N/A 0.489±0.00 0.234±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.828±0.00
ENSG00000213384 ENST00000393781 0.218±0.00 N/A N/A N/A N/A N/A N/A 2.808±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000214535 ENST00000457423 0.117±0.00 0.167±0.00 0.218±0.00 0.124±0.04 1.728±0.00 0.156±0.00 0.158±0.06 0.252±0.00 0.259±0.00 0.280±0.00 1.099±0.00 0.854±0.98 0.450±0.33 0.313±0.20
ENSG00000225127 ENST00000420705 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 N/A 0.359±0.00
ENST00000455890 0.065±0.00 0.023±0.00 N/A 0.205±0.00 N/A N/A N/A 0.057±0.00 N/A N/A N/A 0.140±0.00 N/A 0.139±0.00
ENST00000593272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.092±0.00 N/A 0.072±0.00
ENSG00000225803 ENST00000437558 N/A 0.099±0.00 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.280±0.25
ENSG00000234104 ENST00000432942 N/A N/A N/A 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235065 ENST00000421023 6.025±0.00 5.354±0.00 N/A 0.854±0.00 2.282±2.20 3.918±0.00 1.328±0.00 1.628±0.00 0.795±0.00 5.534±0.00 3.719±0.00 1.032±0.62 0.631±0.26 1.970±1.78
ENSG00000278525 ENST00000461220 N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A 0.060±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000042938 ENSMUST00000122417 0.622±0.22 0.387±0.08 0.451±0.28 0.582±0.07 1.066±0.62 0.741±0.27 1.732±0.26 0.580±0.21 0.533±0.32 0.797±0.42 0.386±0.18 1.381±0.57 0.399±0.17 0.469±0.19
ENSMUSG00000074749 ENSMUST00000099278 2.718±0.50 1.273±0.57 8.198±0.69 5.120±1.26 3.949±0.74 2.072±0.61 8.538±0.76 4.812±0.78 3.344±0.90 5.166±0.57 7.943±0.62 5.651±5.51 3.408±1.34 60.870±18.49
ENSMUST00000135595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156232 N/A 1.500±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080870 ENSMUST00000119851 0.151±0.06 0.173±0.08 0.020±0.00 0.049±0.03 0.177±0.07 0.223±0.07 0.225±0.09 0.263±0.07 0.071±0.05 0.097±0.04 0.136±0.05 0.230±0.15 0.050±0.04 0.058±0.03
ENSMUSG00000085796 ENSMUST00000147212 N/A N/A 0.049±0.01 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.494±0.24
ENSMUSG00000087618 ENSMUST00000139345 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A

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