C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S15a pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000457423 RPS15AP1-001 ENSG00000214535 9606 - 20:21166206-21166596 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000457423
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000457423 0.117±0.00 0.167±0.00 0.218±0.00 0.124±0.04 1.728±0.00 0.156±0.00 0.158±0.06 0.252±0.00 0.259±0.00 0.280±0.00 1.099±0.00 0.854±0.98 0.450±0.33 0.313±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007A2 CIL_0007A2_0002 CGP 20:20389552-21246622
CIL_00097L CIL_00097L_0001 VISTA 20:20934152-21536594
CIL_0002ZA CIL_0002ZA_0001 CGP 20:21125983-21389827
CIL_0007P1 CIL_0007P1_0005 UCNEbase 20:21163909-21195374

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128613 rps15a-001 protein_coding Danio_rerio 0 346
ENSDART00000018822 rps15a-002 retained_intron Danio_rerio 2e-36 156

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