C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107720 Stx17-001 ENSMUSG00000061455 10090 + 4:48124926-48186507 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107720 5.115±0.58 4.195±3.00 8.919±0.27 2.698±1.31 4.004±1.31 4.341±1.12 3.722±0.41 3.158±0.39 4.339±1.44 5.503±0.80 5.840±0.55 3.900±2.11 2.049±0.74 1.725±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007H8 CIL_0007H8_0003 CGP 4:48045153-48186507
CIL_0007A7 CIL_0007A7_0003 CGP 4:48124915-48279558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000046 IEA:ISS autophagic vacuole fusion
GO:0000149 IBA:ISS SNARE binding
GO:0000421 ISS autophagic vacuole membrane
GO:0005484 IBA:ISS SNAP receptor activity
GO:0005739 ISS mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0005793 ISS endoplasmic reticulum-Golgi intermediate compartment
GO:0005829 ISS cytosol
GO:0006886 IBA intracellular protein transport
GO:0006887 IBA exocytosis
GO:0006888 IEA:ISS ER to Golgi vesicle-mediated transport
GO:0007030 ISS Golgi organization
GO:0016021 IEA integral component of membrane
GO:0019901 IEA protein kinase binding
GO:0019903 IEA protein phosphatase binding
GO:0030134 ISS ER to Golgi transport vesicle
GO:0030868 ISS smooth endoplasmic reticulum membrane
GO:0031201 IBA:ISS SNARE complex
GO:0034497 IEA protein localization to pre-autophagosomal structure
GO:0044233 IEA ER-mitochondrion membrane contact site
GO:0097111 IEA:ISS endoplasmic reticulum-Golgi intermediate compartment organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259400 STX17-001 protein_coding Homo_sapiens 0 1112
ENST00000524405 STX17-004 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000525640 STX17-002 protein_coding Homo_sapiens 0 1101
ENST00000525847 STX17-012 processed_transcript Homo_sapiens 0 798
ENST00000529340 STX17-005 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000529385 STX17-009 retained_intron Homo_sapiens 0 518
ENST00000534052 STX17-003 protein_coding Homo_sapiens 0 1101

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