C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 3, sigma 2 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075657 Ap3s2-201 ENSMUSG00000063801 10090 - 7:79875332-79920640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075657
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075657 7.670±0.94 13.342±4.18 6.990±0.98 13.171±6.40 8.235±1.74 6.436±3.36 5.828±0.44 9.322±1.05 6.076±0.58 7.362±2.67 7.101±0.29 10.636±4.43 3.436±1.54 2.432±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000594 CIL_000594_0002 CGP 7:79821803-79920640
CIL_0007EL CIL_0007EL_0002 CGP 7:79875332-79935359

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005802 TAS trans-Golgi network
GO:0006886 TAS intracellular protein transport
GO:0008089 IMP anterograde axon cargo transport
GO:0008565 IEA protein transporter activity
GO:0016192 TAS vesicle-mediated transport
GO:0030123 IEA AP-3 adaptor complex
GO:0031410 IEA cytoplasmic vesicle
GO:0048490 IMP anterograde synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336418 AP3S2-001 protein_coding Homo_sapiens 0 826
ENST00000398333 C15orf38-AP3S2-001 protein_coding Homo_sapiens 0 688
ENST00000423566 AP3S2-013 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000557999 AP3S2-005 nonsense_mediated_decay Homo_sapiens 0 726
ENST00000558011 AP3S2-009 protein_coding Homo_sapiens 0 453
ENST00000558648 C15orf38-AP3S2-007 protein_coding Homo_sapiens 0 233
ENST00000558806 AP3S2-006 nonsense_mediated_decay Homo_sapiens 0 715
ENST00000558999 AP3S2-008 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000559162 AP3S2-004 retained_intron Homo_sapiens 0 448
ENST00000559601 AP3S2-003 retained_intron Homo_sapiens 0 327
ENST00000559629 C15orf38-AP3S2-006 protein_coding Homo_sapiens 0 558
ENST00000560184 AP3S2-002 processed_transcript Homo_sapiens 0 540
ENST00000560224 C15orf38-AP3S2-002 processed_transcript Homo_sapiens 0 424
ENST00000560251 AP3S2-010 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000560940 AP3S2-014 protein_coding Homo_sapiens 0 680
ENST00000617003 AP3S2-017 protein_coding Homo_sapiens 6e-32 143

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