C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007GA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000016769-ENSDARG00000019233 CGP 7955 10:15410546-15476159
GeneTranscriptPositionBiotype
ENSDARG00000016769 (sgtb)
small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 		ENSDART00000020665 (sgtb-001) 15410546-15434138 protein_coding
ENSDARG00000019233 (nln)
neurolysin (metallopeptidase M3 family) 		ENSDART00000003839 (nln-001) 15437164-15476154 protein_coding
ENSDART00000123818 (nln-201) 15437263-15476159 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0007GA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000197860-ENSG00000123213 CGP 9606 5:65665928-65871725
GeneTranscriptPositionBiotype
ENSG00000113597 (TRAPPC13)
trafficking protein particle complex 13 		ENST00000231526 (TRAPPC13-003) 65625040-65666069 protein_coding
ENST00000399438 (TRAPPC13-001) 65624716-65666233 protein_coding
ENST00000415825 (TRAPPC13-012) 65664119-65664766 retained_intron
ENST00000438419 (TRAPPC13-004) 65625034-65664764 protein_coding
ENST00000504243 (TRAPPC13-009) 65635340-65660813 nonsense_mediated_decay
ENST00000504751 (TRAPPC13-008) 65625045-65658482 nonsense_mediated_decay
ENST00000505108 (TRAPPC13-011) 65661716-65664764 retained_intron
ENST00000505553 (TRAPPC13-002) 65625045-65664766 protein_coding
ENST00000508304 (TRAPPC13-013) 65625069-65652736 retained_intron
ENST00000509234 (TRAPPC13-010) 65657971-65664381 retained_intron
ENST00000512009 (TRAPPC13-005) 65625004-65666074 retained_intron
ENST00000520525 (TRAPPC13-014) 65655634-65661087 retained_intron
ENSG00000123213 (NLN)
neurolysin (metallopeptidase M3 family) 		ENST00000380985 (NLN-001) 65722196-65829283 protein_coding
ENST00000502464 (NLN-010) 65722243-65829283 protein_coding
ENST00000506539 (NLN-002) 65722258-65793649 retained_intron
ENST00000506677 (NLN-006) 65780028-65786060 retained_intron
ENST00000506799 (NLN-004) 65777417-65823325 retained_intron
ENST00000507201 (NLN-007) 65809126-65812271 processed_transcript
ENST00000509935 (NLN-009) 65788363-65871725 protein_coding
ENST00000511299 (NLN-003) 65781416-65823328 protein_coding
ENST00000514991 (NLN-005) 65722247-65762989 nonsense_mediated_decay
ENST00000515595 (NLN-008) 65818721-65823237 processed_transcript
ENSG00000197860 (SGTB)
small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta 		ENST00000381007 (SGTB-001) 65665928-65722130 protein_coding
ENST00000506816 (SGTB-002) 65680688-65723035 protein_coding
ENSG00000251648 (CTD-2353N24.1)
 ENST00000511047 (CTD-2353N24.1-001) 65732973-65733654 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GA_0001ENSDARG00000016769ENSDART00000020665ENSDARG00000019233ENSDART00000003839ENSDART00000123818CIL_0007GA_0002ENSG00000113597ENST00000231526ENST00000399438ENST00000415825ENST00000438419ENST00000504243ENST00000504751ENST00000505108ENST00000505553ENST00000508304ENST00000509234ENST00000512009ENST00000520525ENSG00000123213ENST00000380985ENST00000502464ENST00000506539ENST00000506677ENST00000506799ENST00000507201ENST00000509935ENST00000511299ENST00000514991ENST00000515595ENSG00000197860ENST00000381007ENST00000506816ENSG00000251648ENST00000511047
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007GA_0001ENSDARG00000016769ENSDART00000020665ENSDARG00000019233ENSDART00000003839ENSDART00000123818CIL_0007GA_0002ENSG00000113597ENST00000231526ENST00000399438ENST00000438419ENST00000504243ENST00000505553ENST00000512009ENSG00000123213ENST00000380985ENST00000502464ENST00000506539ENST00000506799ENST00000511299ENSG00000197860ENST00000381007ENSG00000251648ENST00000511047
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016769 ENSDART00000020665 N/A N/A N/A 47.974±7.86 N/A N/A 6.072±2.67 1.340±0.35 0.098±0.00 N/A 1.972±0.00 N/A N/A N/A
ENSDARG00000019233 ENSDART00000003839 N/A N/A N/A 0.589±0.16 N/A N/A 0.248±0.10 N/A 0.129±0.00 N/A N/A N/A N/A N/A
ENSDART00000123818 N/A N/A N/A N/A N/A N/A 0.103±0.00 2.731±0.66 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113597 ENST00000231526 1.740±0.00 3.247±0.00 N/A 6.884±0.00 2.481±0.00 2.558±0.00 1.619±0.91 3.173±2.04 1.641±0.17 1.688±0.04 0.988±0.36 1.915±0.71 1.509±0.39 2.502±0.72
ENST00000399438 N/A N/A N/A N/A 1.432±0.00 N/A 0.498±0.00 N/A N/A N/A N/A 0.754±0.12 0.504±0.00 N/A
ENST00000415825 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438419 N/A N/A N/A N/A 2.546±0.00 2.284±0.00 2.718±0.00 N/A 1.988±0.00 2.937±0.00 N/A 2.847±0.00 1.216±0.04 3.175±0.00
ENST00000504243 N/A N/A N/A N/A N/A N/A N/A 3.216±0.00 N/A N/A 1.364±0.00 N/A N/A N/A
ENST00000504751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505108 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505553 N/A N/A 1.940±0.00 N/A N/A N/A N/A N/A N/A N/A 1.353±0.00 N/A N/A N/A
ENST00000508304 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512009 N/A 0.768±0.00 N/A N/A 0.896±0.00 0.682±0.00 0.319±0.00 N/A 0.787±0.00 N/A N/A 0.433±0.18 N/A N/A
ENST00000520525 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000123213 ENST00000380985 0.910±0.00 N/A N/A 0.863±0.30 N/A 0.221±0.06 0.389±0.00 1.183±0.00 1.186±0.00 0.548±0.00 2.385±1.31 1.320±0.16 0.825±0.64 0.482±0.00
ENST00000502464 N/A 0.496±0.00 N/A 1.594±0.00 N/A 0.506±0.00 0.213±0.00 0.787±0.00 0.383±0.00 0.452±0.00 N/A N/A N/A 1.039±0.00
ENST00000506539 N/A N/A N/A N/A 0.601±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506799 1.828±0.00 0.864±0.00 N/A 1.577±0.00 1.992±0.06 0.874±0.04 0.898±0.21 2.051±0.00 2.250±0.00 0.722±0.00 5.063±0.00 1.601±0.38 1.101±0.00 0.820±0.30
ENST00000507201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511299 N/A N/A N/A N/A N/A 1.736±0.00 N/A 1.592±0.00 1.972±0.22 0.865±0.00 N/A N/A N/A N/A
ENST00000514991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197860 ENST00000381007 2.761±0.00 2.832±0.00 0.235±0.00 15.389±0.37 1.803±0.08 1.899±1.04 0.923±0.35 1.534±1.02 1.181±0.56 2.543±0.17 0.360±0.23 1.396±0.43 0.788±0.24 1.318±0.72
ENST00000506816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251648 ENST00000511047 N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A 0.091±0.00 N/A N/A

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