| Source ID |
Type |
Tax ID |
Position |
| MECOM |
UCNEbase |
7955 |
15:34741440-34893832  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007J8_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007J8_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007J8_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000085276' => 'MDS1 and EVI1 complex locus',
'ENSG00000213178' => null,
'ENSG00000241383' => null,
'ENSG00000241479' => null,
'ENSMUSG00000027684' => 'MDS1 and EVI1 complex locus',
'ENSMUSG00000069074' => 'predicted gene 10258',
'ENSMUSG00000085702' => 'MDS1 and EVI1 complex locus, opposite strand'
),
'gene_name_arr' => array(
'ENSG00000085276' => 'MECOM',
'ENSG00000213178' => 'RP11-641D5.1',
'ENSG00000241383' => 'RP11-152C17.1',
'ENSG00000241479' => 'RP11-641D5.2',
'ENSMUSG00000027684' => 'Mecom',
'ENSMUSG00000069074' => 'Gm10258',
'ENSMUSG00000085702' => 'Mecomos'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 23 => 'Brain',
(int) 32 => 'Breast',
(int) 44 => 'Colon',
(int) 55 => 'Heart',
(int) 64 => 'Kidney',
(int) 76 => 'Liver',
(int) 90 => 'Lung',
(int) 99 => 'Muscle',
(int) 104 => 'Ovary',
(int) 119 => 'Placenta',
(int) 128 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 40,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000264674' => array(
'start' => '169083499',
'end' => '169146305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-201'
),
'ENST00000433243' => array(
'start' => '169084874',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-016'
),
'ENST00000460814' => array(
'start' => '169084830',
'end' => '169133970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-017'
),
'ENST00000460890' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-011'
),
'ENST00000461430' => array(
'start' => '169120888',
'end' => '169122672',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MECOM-014'
),
'ENST00000464456' => array(
'start' => '169083507',
'end' => '169147734',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-020'
),
'ENST00000466623' => array(
'start' => '169128045',
'end' => '169131880',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-006'
),
'ENST00000468789' => array(
'start' => '169084762',
'end' => '169146675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-018'
),
'ENST00000472280' => array(
'start' => '169084744',
'end' => '169146305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-019'
),
'ENST00000475754' => array(
'start' => '169127907',
'end' => '169146539',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-008'
),
'ENST00000481315' => array(
'start' => '169128024',
'end' => '169269238',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-007'
),
'ENST00000484519' => array(
'start' => '169122618',
'end' => '169146568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-012'
),
'ENST00000485957' => array(
'start' => '169149482',
'end' => '169663618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MECOM-001'
),
'ENST00000486748' => array(
'start' => '169381259',
'end' => '169663390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-005'
),
'ENST00000487503' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-010'
),
'ENST00000492586' => array(
'start' => '169112788',
'end' => '169128034',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-015'
),
'ENST00000494292' => array(
'start' => '169084761',
'end' => '169663470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-004'
),
'ENST00000494597' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-009'
),
'ENST00000418623' => array(
'start' => '169483671',
'end' => '169484080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-641D5.1-001'
),
'ENST00000494900' => array(
'start' => '169003074',
'end' => '169005466',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152C17.1-001'
),
'ENST00000480669' => array(
'start' => '169447867',
'end' => '169477052',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-641D5.2-001'
),
'ENSMUST00000061088' => array(
'start' => '30237972',
'end' => '30238319',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-201'
),
'ENSMUST00000108270' => array(
'start' => '29951306',
'end' => '30013505',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-009'
),
'ENSMUST00000108271' => array(
'start' => '29951307',
'end' => '30140423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-008'
),
'ENSMUST00000166001' => array(
'start' => '29952782',
'end' => '29997702',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-013'
),
'ENSMUST00000170212' => array(
'start' => '29983961',
'end' => '30013061',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-010'
),
'ENSMUST00000172694' => array(
'start' => '29951299',
'end' => '30013156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-012'
),
'ENSMUST00000172697' => array(
'start' => '29965456',
'end' => '30509822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-003'
),
'ENSMUST00000172754' => array(
'start' => '29977344',
'end' => '30548008',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Mecom-002'
),
'ENSMUST00000173022' => array(
'start' => '30236569',
'end' => '30509487',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-006'
),
'ENSMUST00000173059' => array(
'start' => '29952567',
'end' => '30238162',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-007'
),
'ENSMUST00000173411' => array(
'start' => '30014974',
'end' => '30509733',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-004'
),
'ENSMUST00000173495' => array(
'start' => '29951299',
'end' => '30509733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-001'
),
'ENSMUST00000173899' => array(
'start' => '29963074',
'end' => '30509514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-005'
),
'ENSMUST00000174406' => array(
'start' => '29997729',
'end' => '30011439',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-015'
),
'ENSMUST00000174413' => array(
'start' => '29952716',
'end' => '29997663',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-014'
),
'ENSMUST00000174428' => array(
'start' => '29983961',
'end' => '30013204',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mecom-011'
),
'ENSMUST00000091270' => array(
'start' => '30267825',
'end' => '30269947',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm10258-001'
),
'ENSMUST00000125611' => array(
'start' => '30012379',
'end' => '30053185',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Mecomos-001'
),
'ENSMUST00000173827' => array(
'start' => '30017528',
'end' => '30023216',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Mecomos-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007J8_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007J8_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007J8_0001' => array(
'genes_in_region' => array(
'ENSG00000085276' => array(
[maximum depth reached]
),
'ENSG00000213178' => array(
[maximum depth reached]
),
'ENSG00000241383' => array(
[maximum depth reached]
),
'ENSG00000241479' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Lung',
(int) 2 => 'Ovary',
(int) 3 => 'Placenta',
(int) 4 => 'Kidney',
(int) 5 => 'Ovary',
(int) 6 => 'Brain',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Heart',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Bladder',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Brain',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Breast',
(int) 53 => 'Colon',
(int) 54 => 'Heart',
(int) 55 => 'Kidney',
(int) 56 => 'Ovary'
)
),
'CIL_0007J8_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000069074' => array(
[maximum depth reached]
),
'ENSMUSG00000085702' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Colon',
(int) 10 => 'Kidney',
(int) 11 => 'Muscle',
(int) 12 => 'Adrenal',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Brain',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Adrenal',
(int) 26 => 'Breast',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Breast',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Lung',
(int) 63 => 'Ovary',
(int) 64 => 'Liver',
(int) 65 => 'Adrenal',
(int) 66 => 'Liver',
(int) 67 => 'Testis',
(int) 68 => 'Liver',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Adrenal',
(int) 82 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000085276' => 'MDS1 and EVI1 complex locus',
'ENSG00000213178' => null,
'ENSG00000241383' => null,
'ENSG00000241479' => null,
'ENSMUSG00000027684' => 'MDS1 and EVI1 complex locus',
'ENSMUSG00000069074' => 'predicted gene 10258',
'ENSMUSG00000085702' => 'MDS1 and EVI1 complex locus, opposite strand'
)
$gene_name_arr = array(
'ENSG00000085276' => 'MECOM',
'ENSG00000213178' => 'RP11-641D5.1',
'ENSG00000241383' => 'RP11-152C17.1',
'ENSG00000241479' => 'RP11-641D5.2',
'ENSMUSG00000027684' => 'Mecom',
'ENSMUSG00000069074' => 'Gm10258',
'ENSMUSG00000085702' => 'Mecomos'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007J8_0001',
'tax_id' => '9606',
'chromosome' => '3',
'seq_start' => '168988832',
'seq_end' => '169608246',
'region_length' => '619414',
'region_type' => 'UCNEbase',
'el_id' => 'MECOM'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007J8_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '29834894',
'seq_end' => '30452898',
'region_length' => '618004',
'region_type' => 'UCNEbase',
'el_id' => 'MECOM'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007J8_0003',
'tax_id' => '7955',
'chromosome' => '15',
'seq_start' => '34741440',
'seq_end' => '34893832',
'region_length' => '152392',
'region_type' => 'UCNEbase',
'el_id' => 'MECOM'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 23 => 'Brain',
(int) 32 => 'Breast',
(int) 44 => 'Colon',
(int) 55 => 'Heart',
(int) 64 => 'Kidney',
(int) 76 => 'Liver',
(int) 90 => 'Lung',
(int) 99 => 'Muscle',
(int) 104 => 'Ovary',
(int) 119 => 'Placenta',
(int) 128 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 40
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000264674' => array(
'start' => '169083499',
'end' => '169146305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-201'
),
'ENST00000433243' => array(
'start' => '169084874',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-016'
),
'ENST00000460814' => array(
'start' => '169084830',
'end' => '169133970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-017'
),
'ENST00000460890' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-011'
),
'ENST00000461430' => array(
'start' => '169120888',
'end' => '169122672',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MECOM-014'
),
'ENST00000464456' => array(
'start' => '169083507',
'end' => '169147734',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-020'
),
'ENST00000466623' => array(
'start' => '169128045',
'end' => '169131880',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-006'
),
'ENST00000468789' => array(
'start' => '169084762',
'end' => '169146675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-018'
),
'ENST00000472280' => array(
'start' => '169084744',
'end' => '169146305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-019'
),
'ENST00000475754' => array(
'start' => '169127907',
'end' => '169146539',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-008'
),
'ENST00000481315' => array(
'start' => '169128024',
'end' => '169269238',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-007'
),
'ENST00000484519' => array(
'start' => '169122618',
'end' => '169146568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-012'
),
'ENST00000485957' => array(
'start' => '169149482',
'end' => '169663618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MECOM-001'
),
'ENST00000486748' => array(
'start' => '169381259',
'end' => '169663390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-005'
),
'ENST00000487503' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-010'
),
'ENST00000492586' => array(
'start' => '169112788',
'end' => '169128034',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-015'
),
'ENST00000494292' => array(
'start' => '169084761',
'end' => '169663470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-004'
),
'ENST00000494597' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-009'
),
'ENST00000418623' => array(
'start' => '169483671',
'end' => '169484080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-641D5.1-001'
),
'ENST00000494900' => array(
'start' => '169003074',
'end' => '169005466',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152C17.1-001'
),
'ENST00000480669' => array(
'start' => '169447867',
'end' => '169477052',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-641D5.2-001'
),
'ENSMUST00000061088' => array(
'start' => '30237972',
'end' => '30238319',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-201'
),
'ENSMUST00000108270' => array(
'start' => '29951306',
'end' => '30013505',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-009'
),
'ENSMUST00000108271' => array(
'start' => '29951307',
'end' => '30140423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-008'
),
'ENSMUST00000166001' => array(
'start' => '29952782',
'end' => '29997702',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-013'
),
'ENSMUST00000170212' => array(
'start' => '29983961',
'end' => '30013061',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-010'
),
'ENSMUST00000172694' => array(
'start' => '29951299',
'end' => '30013156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-012'
),
'ENSMUST00000172697' => array(
'start' => '29965456',
'end' => '30509822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-003'
),
'ENSMUST00000172754' => array(
'start' => '29977344',
'end' => '30548008',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Mecom-002'
),
'ENSMUST00000173022' => array(
'start' => '30236569',
'end' => '30509487',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-006'
),
'ENSMUST00000173059' => array(
'start' => '29952567',
'end' => '30238162',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-007'
),
'ENSMUST00000173411' => array(
'start' => '30014974',
'end' => '30509733',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-004'
),
'ENSMUST00000173495' => array(
'start' => '29951299',
'end' => '30509733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-001'
),
'ENSMUST00000173899' => array(
'start' => '29963074',
'end' => '30509514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-005'
),
'ENSMUST00000174406' => array(
'start' => '29997729',
'end' => '30011439',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-015'
),
'ENSMUST00000174413' => array(
'start' => '29952716',
'end' => '29997663',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-014'
),
'ENSMUST00000174428' => array(
'start' => '29983961',
'end' => '30013204',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mecom-011'
),
'ENSMUST00000091270' => array(
'start' => '30267825',
'end' => '30269947',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm10258-001'
),
'ENSMUST00000125611' => array(
'start' => '30012379',
'end' => '30053185',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Mecomos-001'
),
'ENSMUST00000173827' => array(
'start' => '30017528',
'end' => '30023216',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Mecomos-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007J8_0001' => array(
'genes_in_region' => array(
'ENSG00000085276' => array(
[maximum depth reached]
),
'ENSG00000213178' => array(
[maximum depth reached]
),
'ENSG00000241383' => array(
[maximum depth reached]
),
'ENSG00000241479' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Lung',
(int) 2 => 'Ovary',
(int) 3 => 'Placenta',
(int) 4 => 'Kidney',
(int) 5 => 'Ovary',
(int) 6 => 'Brain',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Heart',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Bladder',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Brain',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Breast',
(int) 53 => 'Colon',
(int) 54 => 'Heart',
(int) 55 => 'Kidney',
(int) 56 => 'Ovary'
)
),
'CIL_0007J8_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000069074' => array(
[maximum depth reached]
),
'ENSMUSG00000085702' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Colon',
(int) 10 => 'Kidney',
(int) 11 => 'Muscle',
(int) 12 => 'Adrenal',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Brain',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Adrenal',
(int) 26 => 'Breast',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Breast',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Lung',
(int) 63 => 'Ovary',
(int) 64 => 'Liver',
(int) 65 => 'Adrenal',
(int) 66 => 'Liver',
(int) 67 => 'Testis',
(int) 68 => 'Liver',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Adrenal',
(int) 82 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007J8_0003',
'tax_id' => '7955',
'chromosome' => '15',
'seq_start' => '34741440',
'seq_end' => '34893832',
'region_length' => '152392',
'region_type' => 'UCNEbase',
'el_id' => 'MECOM'
)
)
$gene_el = array(
'ENSMUST00000125611' => array(
'Adrenal' => array(
'average_FPKM' => '0.199',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.035',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000173827' => array()
)
$gene_key = 'ENSMUSG00000085702'
$is_first = false
$tran_el = array()
$tran_key = 'ENSMUST00000173827'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007J8_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007J8_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000085276' => 'MDS1 and EVI1 complex locus',
'ENSG00000213178' => null,
'ENSG00000241383' => null,
'ENSG00000241479' => null,
'ENSMUSG00000027684' => 'MDS1 and EVI1 complex locus',
'ENSMUSG00000069074' => 'predicted gene 10258',
'ENSMUSG00000085702' => 'MDS1 and EVI1 complex locus, opposite strand'
),
'gene_name_arr' => array(
'ENSG00000085276' => 'MECOM',
'ENSG00000213178' => 'RP11-641D5.1',
'ENSG00000241383' => 'RP11-152C17.1',
'ENSG00000241479' => 'RP11-641D5.2',
'ENSMUSG00000027684' => 'Mecom',
'ENSMUSG00000069074' => 'Gm10258',
'ENSMUSG00000085702' => 'Mecomos'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 23 => 'Brain',
(int) 32 => 'Breast',
(int) 44 => 'Colon',
(int) 55 => 'Heart',
(int) 64 => 'Kidney',
(int) 76 => 'Liver',
(int) 90 => 'Lung',
(int) 99 => 'Muscle',
(int) 104 => 'Ovary',
(int) 119 => 'Placenta',
(int) 128 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 40,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000264674' => array(
'start' => '169083499',
'end' => '169146305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-201'
),
'ENST00000433243' => array(
'start' => '169084874',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-016'
),
'ENST00000460814' => array(
'start' => '169084830',
'end' => '169133970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-017'
),
'ENST00000460890' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-011'
),
'ENST00000461430' => array(
'start' => '169120888',
'end' => '169122672',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MECOM-014'
),
'ENST00000464456' => array(
'start' => '169083507',
'end' => '169147734',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-020'
),
'ENST00000466623' => array(
'start' => '169128045',
'end' => '169131880',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-006'
),
'ENST00000468789' => array(
'start' => '169084762',
'end' => '169146675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-018'
),
'ENST00000472280' => array(
'start' => '169084744',
'end' => '169146305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-019'
),
'ENST00000475754' => array(
'start' => '169127907',
'end' => '169146539',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-008'
),
'ENST00000481315' => array(
'start' => '169128024',
'end' => '169269238',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-007'
),
'ENST00000484519' => array(
'start' => '169122618',
'end' => '169146568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-012'
),
'ENST00000485957' => array(
'start' => '169149482',
'end' => '169663618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MECOM-001'
),
'ENST00000486748' => array(
'start' => '169381259',
'end' => '169663390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-005'
),
'ENST00000487503' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-010'
),
'ENST00000492586' => array(
'start' => '169112788',
'end' => '169128034',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-015'
),
'ENST00000494292' => array(
'start' => '169084761',
'end' => '169663470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-004'
),
'ENST00000494597' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-009'
),
'ENST00000418623' => array(
'start' => '169483671',
'end' => '169484080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-641D5.1-001'
),
'ENST00000494900' => array(
'start' => '169003074',
'end' => '169005466',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152C17.1-001'
),
'ENST00000480669' => array(
'start' => '169447867',
'end' => '169477052',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-641D5.2-001'
),
'ENSMUST00000061088' => array(
'start' => '30237972',
'end' => '30238319',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-201'
),
'ENSMUST00000108270' => array(
'start' => '29951306',
'end' => '30013505',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-009'
),
'ENSMUST00000108271' => array(
'start' => '29951307',
'end' => '30140423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-008'
),
'ENSMUST00000166001' => array(
'start' => '29952782',
'end' => '29997702',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-013'
),
'ENSMUST00000170212' => array(
'start' => '29983961',
'end' => '30013061',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-010'
),
'ENSMUST00000172694' => array(
'start' => '29951299',
'end' => '30013156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-012'
),
'ENSMUST00000172697' => array(
'start' => '29965456',
'end' => '30509822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-003'
),
'ENSMUST00000172754' => array(
'start' => '29977344',
'end' => '30548008',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Mecom-002'
),
'ENSMUST00000173022' => array(
'start' => '30236569',
'end' => '30509487',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-006'
),
'ENSMUST00000173059' => array(
'start' => '29952567',
'end' => '30238162',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-007'
),
'ENSMUST00000173411' => array(
'start' => '30014974',
'end' => '30509733',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-004'
),
'ENSMUST00000173495' => array(
'start' => '29951299',
'end' => '30509733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-001'
),
'ENSMUST00000173899' => array(
'start' => '29963074',
'end' => '30509514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-005'
),
'ENSMUST00000174406' => array(
'start' => '29997729',
'end' => '30011439',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-015'
),
'ENSMUST00000174413' => array(
'start' => '29952716',
'end' => '29997663',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-014'
),
'ENSMUST00000174428' => array(
'start' => '29983961',
'end' => '30013204',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mecom-011'
),
'ENSMUST00000091270' => array(
'start' => '30267825',
'end' => '30269947',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm10258-001'
),
'ENSMUST00000125611' => array(
'start' => '30012379',
'end' => '30053185',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Mecomos-001'
),
'ENSMUST00000173827' => array(
'start' => '30017528',
'end' => '30023216',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Mecomos-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007J8_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007J8_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007J8_0001' => array(
'genes_in_region' => array(
'ENSG00000085276' => array(
[maximum depth reached]
),
'ENSG00000213178' => array(
[maximum depth reached]
),
'ENSG00000241383' => array(
[maximum depth reached]
),
'ENSG00000241479' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Lung',
(int) 2 => 'Ovary',
(int) 3 => 'Placenta',
(int) 4 => 'Kidney',
(int) 5 => 'Ovary',
(int) 6 => 'Brain',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Heart',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Bladder',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Brain',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Breast',
(int) 53 => 'Colon',
(int) 54 => 'Heart',
(int) 55 => 'Kidney',
(int) 56 => 'Ovary'
)
),
'CIL_0007J8_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000069074' => array(
[maximum depth reached]
),
'ENSMUSG00000085702' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Colon',
(int) 10 => 'Kidney',
(int) 11 => 'Muscle',
(int) 12 => 'Adrenal',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Brain',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Adrenal',
(int) 26 => 'Breast',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Breast',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Lung',
(int) 63 => 'Ovary',
(int) 64 => 'Liver',
(int) 65 => 'Adrenal',
(int) 66 => 'Liver',
(int) 67 => 'Testis',
(int) 68 => 'Liver',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Adrenal',
(int) 82 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000085276' => 'MDS1 and EVI1 complex locus',
'ENSG00000213178' => null,
'ENSG00000241383' => null,
'ENSG00000241479' => null,
'ENSMUSG00000027684' => 'MDS1 and EVI1 complex locus',
'ENSMUSG00000069074' => 'predicted gene 10258',
'ENSMUSG00000085702' => 'MDS1 and EVI1 complex locus, opposite strand'
)
$gene_name_arr = array(
'ENSG00000085276' => 'MECOM',
'ENSG00000213178' => 'RP11-641D5.1',
'ENSG00000241383' => 'RP11-152C17.1',
'ENSG00000241479' => 'RP11-641D5.2',
'ENSMUSG00000027684' => 'Mecom',
'ENSMUSG00000069074' => 'Gm10258',
'ENSMUSG00000085702' => 'Mecomos'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007J8_0001',
'tax_id' => '9606',
'chromosome' => '3',
'seq_start' => '168988832',
'seq_end' => '169608246',
'region_length' => '619414',
'region_type' => 'UCNEbase',
'el_id' => 'MECOM'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007J8_0002',
'tax_id' => '10090',
'chromosome' => '3',
'seq_start' => '29834894',
'seq_end' => '30452898',
'region_length' => '618004',
'region_type' => 'UCNEbase',
'el_id' => 'MECOM'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007J8_0003',
'tax_id' => '7955',
'chromosome' => '15',
'seq_start' => '34741440',
'seq_end' => '34893832',
'region_length' => '152392',
'region_type' => 'UCNEbase',
'el_id' => 'MECOM'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 7 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 23 => 'Brain',
(int) 32 => 'Breast',
(int) 44 => 'Colon',
(int) 55 => 'Heart',
(int) 64 => 'Kidney',
(int) 76 => 'Liver',
(int) 90 => 'Lung',
(int) 99 => 'Muscle',
(int) 104 => 'Ovary',
(int) 119 => 'Placenta',
(int) 128 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 40
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000264674' => array(
'start' => '169083499',
'end' => '169146305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-201'
),
'ENST00000433243' => array(
'start' => '169084874',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-016'
),
'ENST00000460814' => array(
'start' => '169084830',
'end' => '169133970',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-017'
),
'ENST00000460890' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-011'
),
'ENST00000461430' => array(
'start' => '169120888',
'end' => '169122672',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MECOM-014'
),
'ENST00000464456' => array(
'start' => '169083507',
'end' => '169147734',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-020'
),
'ENST00000466623' => array(
'start' => '169128045',
'end' => '169131880',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-006'
),
'ENST00000468789' => array(
'start' => '169084762',
'end' => '169146675',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-018'
),
'ENST00000472280' => array(
'start' => '169084744',
'end' => '169146305',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-019'
),
'ENST00000475754' => array(
'start' => '169127907',
'end' => '169146539',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-008'
),
'ENST00000481315' => array(
'start' => '169128024',
'end' => '169269238',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-007'
),
'ENST00000484519' => array(
'start' => '169122618',
'end' => '169146568',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-012'
),
'ENST00000485957' => array(
'start' => '169149482',
'end' => '169663618',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MECOM-001'
),
'ENST00000486748' => array(
'start' => '169381259',
'end' => '169663390',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-005'
),
'ENST00000487503' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-010'
),
'ENST00000492586' => array(
'start' => '169112788',
'end' => '169128034',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-015'
),
'ENST00000494292' => array(
'start' => '169084761',
'end' => '169663470',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-004'
),
'ENST00000494597' => array(
'start' => '169122683',
'end' => '169146288',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MECOM-009'
),
'ENST00000418623' => array(
'start' => '169483671',
'end' => '169484080',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-641D5.1-001'
),
'ENST00000494900' => array(
'start' => '169003074',
'end' => '169005466',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-152C17.1-001'
),
'ENST00000480669' => array(
'start' => '169447867',
'end' => '169477052',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-641D5.2-001'
),
'ENSMUST00000061088' => array(
'start' => '30237972',
'end' => '30238319',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-201'
),
'ENSMUST00000108270' => array(
'start' => '29951306',
'end' => '30013505',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-009'
),
'ENSMUST00000108271' => array(
'start' => '29951307',
'end' => '30140423',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-008'
),
'ENSMUST00000166001' => array(
'start' => '29952782',
'end' => '29997702',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-013'
),
'ENSMUST00000170212' => array(
'start' => '29983961',
'end' => '30013061',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-010'
),
'ENSMUST00000172694' => array(
'start' => '29951299',
'end' => '30013156',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-012'
),
'ENSMUST00000172697' => array(
'start' => '29965456',
'end' => '30509822',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-003'
),
'ENSMUST00000172754' => array(
'start' => '29977344',
'end' => '30548008',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Mecom-002'
),
'ENSMUST00000173022' => array(
'start' => '30236569',
'end' => '30509487',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-006'
),
'ENSMUST00000173059' => array(
'start' => '29952567',
'end' => '30238162',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-007'
),
'ENSMUST00000173411' => array(
'start' => '30014974',
'end' => '30509733',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mecom-004'
),
'ENSMUST00000173495' => array(
'start' => '29951299',
'end' => '30509733',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-001'
),
'ENSMUST00000173899' => array(
'start' => '29963074',
'end' => '30509514',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-005'
),
'ENSMUST00000174406' => array(
'start' => '29997729',
'end' => '30011439',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-015'
),
'ENSMUST00000174413' => array(
'start' => '29952716',
'end' => '29997663',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mecom-014'
),
'ENSMUST00000174428' => array(
'start' => '29983961',
'end' => '30013204',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Mecom-011'
),
'ENSMUST00000091270' => array(
'start' => '30267825',
'end' => '30269947',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'Gm10258-001'
),
'ENSMUST00000125611' => array(
'start' => '30012379',
'end' => '30053185',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Mecomos-001'
),
'ENSMUST00000173827' => array(
'start' => '30017528',
'end' => '30023216',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Mecomos-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007J8_0001' => array(
'genes_in_region' => array(
'ENSG00000085276' => array(
[maximum depth reached]
),
'ENSG00000213178' => array(
[maximum depth reached]
),
'ENSG00000241383' => array(
[maximum depth reached]
),
'ENSG00000241479' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Colon',
(int) 1 => 'Lung',
(int) 2 => 'Ovary',
(int) 3 => 'Placenta',
(int) 4 => 'Kidney',
(int) 5 => 'Ovary',
(int) 6 => 'Brain',
(int) 7 => 'Adrenal',
(int) 8 => 'Brain',
(int) 9 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Lung',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Brain',
(int) 19 => 'Breast',
(int) 20 => 'Heart',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Testis',
(int) 26 => 'Bladder',
(int) 27 => 'Breast',
(int) 28 => 'Colon',
(int) 29 => 'Heart',
(int) 30 => 'Kidney',
(int) 31 => 'Bladder',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Liver',
(int) 35 => 'Lung',
(int) 36 => 'Ovary',
(int) 37 => 'Placenta',
(int) 38 => 'Adipose',
(int) 39 => 'Bladder',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Heart',
(int) 44 => 'Kidney',
(int) 45 => 'Liver',
(int) 46 => 'Lung',
(int) 47 => 'Ovary',
(int) 48 => 'Brain',
(int) 49 => 'Testis',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Breast',
(int) 53 => 'Colon',
(int) 54 => 'Heart',
(int) 55 => 'Kidney',
(int) 56 => 'Ovary'
)
),
'CIL_0007J8_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000069074' => array(
[maximum depth reached]
),
'ENSMUSG00000085702' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Kidney',
(int) 4 => 'Liver',
(int) 5 => 'Lung',
(int) 6 => 'Placenta',
(int) 7 => 'Testis',
(int) 8 => 'Bladder',
(int) 9 => 'Colon',
(int) 10 => 'Kidney',
(int) 11 => 'Muscle',
(int) 12 => 'Adrenal',
(int) 13 => 'Brain',
(int) 14 => 'Breast',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Ovary',
(int) 18 => 'Placenta',
(int) 19 => 'Testis',
(int) 20 => 'Brain',
(int) 21 => 'Liver',
(int) 22 => 'Muscle',
(int) 23 => 'Ovary',
(int) 24 => 'Placenta',
(int) 25 => 'Adrenal',
(int) 26 => 'Breast',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Muscle',
(int) 30 => 'Ovary',
(int) 31 => 'Breast',
(int) 32 => 'Testis',
(int) 33 => 'Adipose',
(int) 34 => 'Adrenal',
(int) 35 => 'Breast',
(int) 36 => 'Colon',
(int) 37 => 'Heart',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Ovary',
(int) 42 => 'Testis',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Adrenal',
(int) 46 => 'Bladder',
(int) 47 => 'Brain',
(int) 48 => 'Breast',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Liver',
(int) 53 => 'Lung',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Testis',
(int) 57 => 'Adipose',
(int) 58 => 'Breast',
(int) 59 => 'Colon',
(int) 60 => 'Heart',
(int) 61 => 'Kidney',
(int) 62 => 'Lung',
(int) 63 => 'Ovary',
(int) 64 => 'Liver',
(int) 65 => 'Adrenal',
(int) 66 => 'Liver',
(int) 67 => 'Testis',
(int) 68 => 'Liver',
(int) 69 => 'Ovary',
(int) 70 => 'Testis',
(int) 71 => 'Adipose',
(int) 72 => 'Bladder',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Kidney',
(int) 77 => 'Liver',
(int) 78 => 'Lung',
(int) 79 => 'Ovary',
(int) 80 => 'Placenta',
(int) 81 => 'Adrenal',
(int) 82 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007J8_0003',
'tax_id' => '7955',
'chromosome' => '15',
'seq_start' => '34741440',
'seq_end' => '34893832',
'region_length' => '152392',
'region_type' => 'UCNEbase',
'el_id' => 'MECOM'
)
)
$gene_el = array(
'ENSMUST00000125611' => array(
'Adrenal' => array(
'average_FPKM' => '0.199',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.035',
'stddev_FPKM' => '0.00'
)
),
'ENSMUST00000173827' => array()
)
$gene_key = 'ENSMUSG00000085702'
$is_first = false
$tran_el = array()
$tran_key = 'ENSMUST00000173827'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(MECOM)