C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MDS1 and EVI1 complex locus
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460814 MECOM-017 ENSG00000085276 9606 - 3:169084830-169133970 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000460814
Transcript ID Brain
ENST00000460814 0.252±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SS CIL_0008SS_0001 VISTA 3:168815604-169416752
CIL_000921 CIL_000921_0001 VISTA 3:168940545-169545156
CIL_0007J8 CIL_0007J8_0001 UCNEbase 3:168988832-169608246
CIL_0001ZH CIL_0001ZH_0001 CGP 3:169083499-169769895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108270 Mecom-009 protein_coding Mus_musculus 0 4084
ENSMUST00000173495 Mecom-001 protein_coding Mus_musculus 0 3964
ENSMUST00000166001 Mecom-013 protein_coding Mus_musculus 0 3687
ENSMUST00000173899 Mecom-005 protein_coding Mus_musculus 0 3507
ENSMUST00000172697 Mecom-003 protein_coding Mus_musculus 0 3184
ENSMUST00000172754 Mecom-002 nonsense_mediated_decay Mus_musculus 0 2591
ENSMUST00000173059 Mecom-007 protein_coding Mus_musculus 0 1729
ENSMUST00000108271 Mecom-008 protein_coding Mus_musculus 0 1729
ENSMUST00000172694 Mecom-012 protein_coding Mus_musculus 0 1729
ENSMUST00000174413 Mecom-014 protein_coding Mus_musculus 0 1496
ENSMUST00000174428 Mecom-011 retained_intron Mus_musculus 0 750
ENSMUST00000170212 Mecom-010 processed_transcript Mus_musculus 0 747

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