C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418623 RP11-641D5.1-001 ENSG00000213178 9606 - 3:169483671-169484080 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000418623
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000418623 0.062±0.00 1.655±0.00 0.301±0.21 1.690±0.00 1.015±0.00 0.712±0.00 1.748±0.00 0.331±0.00 1.781±0.00 3.447±3.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000921 CIL_000921_0001 VISTA 3:168940545-169545156
CIL_0007J8 CIL_0007J8_0001 UCNEbase 3:168988832-169608246
CIL_0001ZH CIL_0001ZH_0001 CGP 3:169083499-169769895

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188151 Rpl22-201 protein_coding Mus_musculus 0 390
ENSMUST00000139685 Rpl22-002 protein_coding Mus_musculus 0 390
ENSMUST00000103191 Rpl22-001 protein_coding Mus_musculus 0 390
ENSMUST00000142735 Rpl22-003 processed_transcript Mus_musculus 0 390
ENSMUST00000121451 Gm12005-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000150485 Rpl22-006 processed_transcript Mus_musculus 0 307
ENSMUST00000180176 Gm9457-201 processed_pseudogene Mus_musculus 0 298
ENSMUST00000118297 Gm13196-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000118652 Rpl22-ps1-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000156445 Rpl22-007 processed_transcript Mus_musculus 0 259
ENSMUST00000127659 Rpl22-005 processed_transcript Mus_musculus 0 209
ENSMUST00000126519 Rpl22-004 processed_transcript Mus_musculus 4e-23 111

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