| Source ID |
Type |
Tax ID |
Position |
| OLIG2 |
UCNEbase |
7955 |
9:33820043-33820155  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007LZ_0007 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LZ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LZ_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LZ_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000205927' => 'oligodendrocyte lineage transcription factor 2',
'ENSG00000228961' => null,
'ENSG00000184221' => 'oligodendrocyte transcription factor 1',
'ENSG00000227757' => null,
'ENSG00000232539' => 'long intergenic non-protein coding RNA 945',
'ENSMUSG00000039830' => 'oligodendrocyte transcription factor 2',
'ENSMUSG00000046160' => 'oligodendrocyte transcription factor 1',
'ENSMUSG00000052471' => 'predicted gene 9881'
),
'gene_name_arr' => array(
'ENSG00000205927' => 'OLIG2',
'ENSG00000228961' => 'AP000282.3',
'ENSG00000184221' => 'OLIG1',
'ENSG00000227757' => 'AP000282.2',
'ENSG00000232539' => 'LINC00945',
'ENSMUSG00000039830' => 'Olig2',
'ENSMUSG00000046160' => 'Olig1',
'ENSMUSG00000052471' => 'Gm9881'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 14 => 'Brain',
(int) 22 => 'Breast',
(int) 25 => 'Colon',
(int) 28 => 'Heart',
(int) 31 => 'Kidney',
(int) 34 => 'Liver',
(int) 36 => 'Lung',
(int) 39 => 'Muscle',
(int) 43 => 'Ovary',
(int) 53 => 'Placenta',
(int) 59 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 12,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000333337' => array(
'start' => '33025935',
'end' => '33029196',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-002'
),
'ENST00000382357' => array(
'start' => '33025845',
'end' => '33029196',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-001'
),
'ENST00000430860' => array(
'start' => '33025935',
'end' => '33027049',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-003'
),
'ENST00000424837' => array(
'start' => '32958888',
'end' => '32960566',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000282.3-001'
),
'ENST00000382348' => array(
'start' => '33070144',
'end' => '33072420',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG1-001'
),
'ENST00000426947' => array(
'start' => '33070965',
'end' => '33072413',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG1-002'
),
'ENST00000498799' => array(
'start' => '33071668',
'end' => '33072413',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OLIG1-003'
),
'ENST00000454622' => array(
'start' => '32913649',
'end' => '33071104',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000282.2-001'
),
'ENST00000453716' => array(
'start' => '33057829',
'end' => '33064983',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00945-001'
),
'ENSMUST00000035608' => array(
'start' => '91225550',
'end' => '91228677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Olig2-001'
),
'ENSMUST00000056882' => array(
'start' => '91269772',
'end' => '91271933',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Olig1-001'
),
'ENSMUST00000068783' => array(
'start' => '91168197',
'end' => '91171401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm9881-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LZ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LZ_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LZ_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LZ_0003' => array(
'genes_in_region' => array(
'ENSG00000205927' => array(
[maximum depth reached]
),
'ENSG00000228961' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Ovary',
(int) 3 => 'Testis',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Ovary',
(int) 19 => 'Testis'
)
),
'CIL_0007LZ_0005' => array(
'genes_in_region' => array(
'ENSG00000184221' => array(
[maximum depth reached]
),
'ENSG00000227757' => array(
[maximum depth reached]
),
'ENSG00000232539' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Lung',
(int) 5 => 'Muscle',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Heart',
(int) 10 => 'Lung',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Ovary',
(int) 15 => 'Brain'
)
),
'CIL_0007LZ_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000039830' => array(
[maximum depth reached]
),
'ENSMUSG00000046160' => array(
[maximum depth reached]
),
'ENSMUSG00000052471' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Heart',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000205927' => 'oligodendrocyte lineage transcription factor 2',
'ENSG00000228961' => null,
'ENSG00000184221' => 'oligodendrocyte transcription factor 1',
'ENSG00000227757' => null,
'ENSG00000232539' => 'long intergenic non-protein coding RNA 945',
'ENSMUSG00000039830' => 'oligodendrocyte transcription factor 2',
'ENSMUSG00000046160' => 'oligodendrocyte transcription factor 1',
'ENSMUSG00000052471' => 'predicted gene 9881'
)
$gene_name_arr = array(
'ENSG00000205927' => 'OLIG2',
'ENSG00000228961' => 'AP000282.3',
'ENSG00000184221' => 'OLIG1',
'ENSG00000227757' => 'AP000282.2',
'ENSG00000232539' => 'LINC00945',
'ENSMUSG00000039830' => 'Olig2',
'ENSMUSG00000046160' => 'Olig1',
'ENSMUSG00000052471' => 'Gm9881'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0001',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '32918825',
'seq_end' => '32953875',
'region_length' => '35050',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0002',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '32953876',
'seq_end' => '32957570',
'region_length' => '3694',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0003',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '32957570',
'seq_end' => '33044921',
'region_length' => '87351',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0004',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '33044922',
'seq_end' => '33054002',
'region_length' => '9080',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0005',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '33054003',
'seq_end' => '33096093',
'region_length' => '42090',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0006',
'tax_id' => '10090',
'chromosome' => '16',
'seq_start' => '91140494',
'seq_end' => '91293136',
'region_length' => '152642',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0007',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '33820043',
'seq_end' => '33820155',
'region_length' => '112',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 14 => 'Brain',
(int) 22 => 'Breast',
(int) 25 => 'Colon',
(int) 28 => 'Heart',
(int) 31 => 'Kidney',
(int) 34 => 'Liver',
(int) 36 => 'Lung',
(int) 39 => 'Muscle',
(int) 43 => 'Ovary',
(int) 53 => 'Placenta',
(int) 59 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 12
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000333337' => array(
'start' => '33025935',
'end' => '33029196',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-002'
),
'ENST00000382357' => array(
'start' => '33025845',
'end' => '33029196',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-001'
),
'ENST00000430860' => array(
'start' => '33025935',
'end' => '33027049',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-003'
),
'ENST00000424837' => array(
'start' => '32958888',
'end' => '32960566',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000282.3-001'
),
'ENST00000382348' => array(
'start' => '33070144',
'end' => '33072420',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG1-001'
),
'ENST00000426947' => array(
'start' => '33070965',
'end' => '33072413',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG1-002'
),
'ENST00000498799' => array(
'start' => '33071668',
'end' => '33072413',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OLIG1-003'
),
'ENST00000454622' => array(
'start' => '32913649',
'end' => '33071104',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000282.2-001'
),
'ENST00000453716' => array(
'start' => '33057829',
'end' => '33064983',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00945-001'
),
'ENSMUST00000035608' => array(
'start' => '91225550',
'end' => '91228677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Olig2-001'
),
'ENSMUST00000056882' => array(
'start' => '91269772',
'end' => '91271933',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Olig1-001'
),
'ENSMUST00000068783' => array(
'start' => '91168197',
'end' => '91171401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm9881-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LZ_0003' => array(
'genes_in_region' => array(
'ENSG00000205927' => array(
[maximum depth reached]
),
'ENSG00000228961' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Ovary',
(int) 3 => 'Testis',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Ovary',
(int) 19 => 'Testis'
)
),
'CIL_0007LZ_0005' => array(
'genes_in_region' => array(
'ENSG00000184221' => array(
[maximum depth reached]
),
'ENSG00000227757' => array(
[maximum depth reached]
),
'ENSG00000232539' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Lung',
(int) 5 => 'Muscle',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Heart',
(int) 10 => 'Lung',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Ovary',
(int) 15 => 'Brain'
)
),
'CIL_0007LZ_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000039830' => array(
[maximum depth reached]
),
'ENSMUSG00000046160' => array(
[maximum depth reached]
),
'ENSMUSG00000052471' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Heart',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0007',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '33820043',
'seq_end' => '33820155',
'region_length' => '112',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
)
$gene_el = array(
'ENSMUST00000068783' => array(
'Adrenal' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.005',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.010',
'stddev_FPKM' => '0.01'
),
'Heart' => array(
'average_FPKM' => '0.009',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.05'
)
)
)
$gene_key = 'ENSMUSG00000052471'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.005',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.010',
'stddev_FPKM' => '0.01'
),
'Heart' => array(
'average_FPKM' => '0.009',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.05'
)
)
$tran_key = 'ENSMUST00000068783'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LZ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LZ_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LZ_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000205927' => 'oligodendrocyte lineage transcription factor 2',
'ENSG00000228961' => null,
'ENSG00000184221' => 'oligodendrocyte transcription factor 1',
'ENSG00000227757' => null,
'ENSG00000232539' => 'long intergenic non-protein coding RNA 945',
'ENSMUSG00000039830' => 'oligodendrocyte transcription factor 2',
'ENSMUSG00000046160' => 'oligodendrocyte transcription factor 1',
'ENSMUSG00000052471' => 'predicted gene 9881'
),
'gene_name_arr' => array(
'ENSG00000205927' => 'OLIG2',
'ENSG00000228961' => 'AP000282.3',
'ENSG00000184221' => 'OLIG1',
'ENSG00000227757' => 'AP000282.2',
'ENSG00000232539' => 'LINC00945',
'ENSMUSG00000039830' => 'Olig2',
'ENSMUSG00000046160' => 'Olig1',
'ENSMUSG00000052471' => 'Gm9881'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 6 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 14 => 'Brain',
(int) 22 => 'Breast',
(int) 25 => 'Colon',
(int) 28 => 'Heart',
(int) 31 => 'Kidney',
(int) 34 => 'Liver',
(int) 36 => 'Lung',
(int) 39 => 'Muscle',
(int) 43 => 'Ovary',
(int) 53 => 'Placenta',
(int) 59 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 12,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000333337' => array(
'start' => '33025935',
'end' => '33029196',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-002'
),
'ENST00000382357' => array(
'start' => '33025845',
'end' => '33029196',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-001'
),
'ENST00000430860' => array(
'start' => '33025935',
'end' => '33027049',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-003'
),
'ENST00000424837' => array(
'start' => '32958888',
'end' => '32960566',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000282.3-001'
),
'ENST00000382348' => array(
'start' => '33070144',
'end' => '33072420',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG1-001'
),
'ENST00000426947' => array(
'start' => '33070965',
'end' => '33072413',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG1-002'
),
'ENST00000498799' => array(
'start' => '33071668',
'end' => '33072413',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OLIG1-003'
),
'ENST00000454622' => array(
'start' => '32913649',
'end' => '33071104',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000282.2-001'
),
'ENST00000453716' => array(
'start' => '33057829',
'end' => '33064983',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00945-001'
),
'ENSMUST00000035608' => array(
'start' => '91225550',
'end' => '91228677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Olig2-001'
),
'ENSMUST00000056882' => array(
'start' => '91269772',
'end' => '91271933',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Olig1-001'
),
'ENSMUST00000068783' => array(
'start' => '91168197',
'end' => '91171401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm9881-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LZ_0003' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LZ_0005' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LZ_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LZ_0003' => array(
'genes_in_region' => array(
'ENSG00000205927' => array(
[maximum depth reached]
),
'ENSG00000228961' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Ovary',
(int) 3 => 'Testis',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Ovary',
(int) 19 => 'Testis'
)
),
'CIL_0007LZ_0005' => array(
'genes_in_region' => array(
'ENSG00000184221' => array(
[maximum depth reached]
),
'ENSG00000227757' => array(
[maximum depth reached]
),
'ENSG00000232539' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Lung',
(int) 5 => 'Muscle',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Heart',
(int) 10 => 'Lung',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Ovary',
(int) 15 => 'Brain'
)
),
'CIL_0007LZ_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000039830' => array(
[maximum depth reached]
),
'ENSMUSG00000046160' => array(
[maximum depth reached]
),
'ENSMUSG00000052471' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Heart',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000205927' => 'oligodendrocyte lineage transcription factor 2',
'ENSG00000228961' => null,
'ENSG00000184221' => 'oligodendrocyte transcription factor 1',
'ENSG00000227757' => null,
'ENSG00000232539' => 'long intergenic non-protein coding RNA 945',
'ENSMUSG00000039830' => 'oligodendrocyte transcription factor 2',
'ENSMUSG00000046160' => 'oligodendrocyte transcription factor 1',
'ENSMUSG00000052471' => 'predicted gene 9881'
)
$gene_name_arr = array(
'ENSG00000205927' => 'OLIG2',
'ENSG00000228961' => 'AP000282.3',
'ENSG00000184221' => 'OLIG1',
'ENSG00000227757' => 'AP000282.2',
'ENSG00000232539' => 'LINC00945',
'ENSMUSG00000039830' => 'Olig2',
'ENSMUSG00000046160' => 'Olig1',
'ENSMUSG00000052471' => 'Gm9881'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0001',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '32918825',
'seq_end' => '32953875',
'region_length' => '35050',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0002',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '32953876',
'seq_end' => '32957570',
'region_length' => '3694',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0003',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '32957570',
'seq_end' => '33044921',
'region_length' => '87351',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0004',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '33044922',
'seq_end' => '33054002',
'region_length' => '9080',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0005',
'tax_id' => '9606',
'chromosome' => '21',
'seq_start' => '33054003',
'seq_end' => '33096093',
'region_length' => '42090',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0006',
'tax_id' => '10090',
'chromosome' => '16',
'seq_start' => '91140494',
'seq_end' => '91293136',
'region_length' => '152642',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
),
(int) 6 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0007',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '33820043',
'seq_end' => '33820155',
'region_length' => '112',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 2 => 'Adrenal',
(int) 8 => 'Bladder',
(int) 14 => 'Brain',
(int) 22 => 'Breast',
(int) 25 => 'Colon',
(int) 28 => 'Heart',
(int) 31 => 'Kidney',
(int) 34 => 'Liver',
(int) 36 => 'Lung',
(int) 39 => 'Muscle',
(int) 43 => 'Ovary',
(int) 53 => 'Placenta',
(int) 59 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 12
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000333337' => array(
'start' => '33025935',
'end' => '33029196',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-002'
),
'ENST00000382357' => array(
'start' => '33025845',
'end' => '33029196',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-001'
),
'ENST00000430860' => array(
'start' => '33025935',
'end' => '33027049',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG2-003'
),
'ENST00000424837' => array(
'start' => '32958888',
'end' => '32960566',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'AP000282.3-001'
),
'ENST00000382348' => array(
'start' => '33070144',
'end' => '33072420',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG1-001'
),
'ENST00000426947' => array(
'start' => '33070965',
'end' => '33072413',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'OLIG1-002'
),
'ENST00000498799' => array(
'start' => '33071668',
'end' => '33072413',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'OLIG1-003'
),
'ENST00000454622' => array(
'start' => '32913649',
'end' => '33071104',
'transcript_biotype' => 'antisense',
'transcript_name' => 'AP000282.2-001'
),
'ENST00000453716' => array(
'start' => '33057829',
'end' => '33064983',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC00945-001'
),
'ENSMUST00000035608' => array(
'start' => '91225550',
'end' => '91228677',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Olig2-001'
),
'ENSMUST00000056882' => array(
'start' => '91269772',
'end' => '91271933',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Olig1-001'
),
'ENSMUST00000068783' => array(
'start' => '91168197',
'end' => '91171401',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Gm9881-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LZ_0003' => array(
'genes_in_region' => array(
'ENSG00000205927' => array(
[maximum depth reached]
),
'ENSG00000228961' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adrenal',
(int) 1 => 'Brain',
(int) 2 => 'Ovary',
(int) 3 => 'Testis',
(int) 4 => 'Bladder',
(int) 5 => 'Brain',
(int) 6 => 'Breast',
(int) 7 => 'Colon',
(int) 8 => 'Muscle',
(int) 9 => 'Ovary',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Adrenal',
(int) 13 => 'Muscle',
(int) 14 => 'Ovary',
(int) 15 => 'Adrenal',
(int) 16 => 'Bladder',
(int) 17 => 'Brain',
(int) 18 => 'Ovary',
(int) 19 => 'Testis'
)
),
'CIL_0007LZ_0005' => array(
'genes_in_region' => array(
'ENSG00000184221' => array(
[maximum depth reached]
),
'ENSG00000227757' => array(
[maximum depth reached]
),
'ENSG00000232539' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Bladder',
(int) 1 => 'Brain',
(int) 2 => 'Colon',
(int) 3 => 'Kidney',
(int) 4 => 'Lung',
(int) 5 => 'Muscle',
(int) 6 => 'Ovary',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Heart',
(int) 10 => 'Lung',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Ovary',
(int) 15 => 'Brain'
)
),
'CIL_0007LZ_0006' => array(
'genes_in_region' => array(
'ENSMUSG00000039830' => array(
[maximum depth reached]
),
'ENSMUSG00000046160' => array(
[maximum depth reached]
),
'ENSMUSG00000052471' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Kidney',
(int) 6 => 'Liver',
(int) 7 => 'Muscle',
(int) 8 => 'Ovary',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Adipose',
(int) 12 => 'Adrenal',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Adrenal',
(int) 25 => 'Bladder',
(int) 26 => 'Brain',
(int) 27 => 'Heart',
(int) 28 => 'Ovary',
(int) 29 => 'Placenta',
(int) 30 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LZ_0007',
'tax_id' => '7955',
'chromosome' => '9',
'seq_start' => '33820043',
'seq_end' => '33820155',
'region_length' => '112',
'region_type' => 'UCNEbase',
'el_id' => 'OLIG2'
)
)
$gene_el = array(
'ENSMUST00000068783' => array(
'Adrenal' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.005',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.010',
'stddev_FPKM' => '0.01'
),
'Heart' => array(
'average_FPKM' => '0.009',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.05'
)
)
)
$gene_key = 'ENSMUSG00000052471'
$is_first = false
$tran_el = array(
'Adrenal' => array(
'average_FPKM' => '0.029',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.005',
'stddev_FPKM' => '0.00'
),
'Brain' => array(
'average_FPKM' => '0.010',
'stddev_FPKM' => '0.01'
),
'Heart' => array(
'average_FPKM' => '0.009',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.008',
'stddev_FPKM' => '0.00'
),
'Placenta' => array(
'average_FPKM' => '0.004',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '0.064',
'stddev_FPKM' => '0.05'
)
)
$tran_key = 'ENSMUST00000068783'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(OLIG2)