C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330949 SOX1-001 ENSG00000182968 9606 + 13:112067647-112070488 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonOvaryTestisENST00000330949
Transcript ID Adrenal Brain Breast Colon Ovary Testis
ENST00000330949 0.007±0.00 1.319±0.77 0.007±0.00 0.061±0.00 0.007±0.00 2.227±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SC CIL_0008SC_0001 VISTA 13:111838839-112439816
CIL_0007MI CIL_0007MI_0001 UCNEbase 13:111976795-112139574

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001046 IDA core promoter sequence-specific DNA binding
GO:0001764 IEA neuron migration
GO:0002089 IEA lens morphogenesis in camera-type eye
GO:0003677 NAS DNA binding
GO:0003700 NAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 NAS nucleus
GO:0006325 NAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0021521 IEA ventral spinal cord interneuron specification
GO:0021879 IEA forebrain neuron differentiation
GO:0021884 IEA forebrain neuron development
GO:0030900 IEA forebrain development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180353 Sox1-001 protein_coding Mus_musculus 0 2119
ENSMUST00000135107 Sox3-001 protein_coding Mus_musculus 0 407
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0 372
ENSMUST00000170662 Sox21-001 protein_coding Mus_musculus 0 326
ENSMUST00000054819 Sox14-001 protein_coding Mus_musculus 0 302
ENSMUST00000183065 Sox14-002 protein_coding Mus_musculus 0 292
ENSDART00000075617 sox3-001 protein_coding Danio_rerio 0 279
ENSDART00000058910 sox19b-001 protein_coding Danio_rerio 0 215
ENSDART00000049339 sox21a-001 protein_coding Danio_rerio 9.99967e-42 176
ENSMUST00000079063 Sox11-001 protein_coding Mus_musculus 0.00000002 66
ENSDART00000100998 sox6-201 protein_coding Danio_rerio 0.00005 55
ENSDART00000149843 sox6-003 retained_intron Danio_rerio 0.00005 55
ENSDART00000150068 sox6-001 protein_coding Danio_rerio 0.00005 55

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