C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0007MN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX6 UCNEbase 9606 11:15367929-16420508
GeneTranscriptPositionBiotype
ENSG00000254645 (RP11-396O20.2)
ENST00000524613 (RP11-396O20.2-001) 15701963-15758898 lincRNA
ENSG00000254661 (RP11-222N13.1)
ENST00000530418 (RP11-222N13.1-001) 15910957-15927443 lincRNA
ENSG00000254695 (RP11-396O20.1)
ENST00000532242 (RP11-396O20.1-001) 15643885-15705368 lincRNA
ENSG00000254789 (RP11-531H8.2)
ENST00000533082 (RP11-531H8.2-001) 15572023-15622391 lincRNA
ENSG00000254878 (CTD-3096P4.1)
ENST00000531763 (CTD-3096P4.1-001) 16023190-16031515 antisense
ENSG00000254946 (RP11-531H8.1)
ENST00000527770 (RP11-531H8.1-001) 15552855-15591098 lincRNA
CIL_0007MN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX6 UCNEbase 9606 11:16420508-16600433
GeneTranscriptPositionBiotype
ENSG00000213785 (RP11-449L13.2)
ENST00000525311 (RP11-449L13.2-001) 16484084-16484671 processed_pseudogene
ENSG00000241943 (RN7SL188P)
RNA, 7SL, cytoplasmic 188, pseudogene
ENST00000469842 (RN7SL188P-201) 16576851-16577135 misc_RNA
CIL_0007MN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX6 UCNEbase 10090 7:114963422-116027485
GeneTranscriptPositionBiotype
ENSMUSG00000051910 (Sox6)
SRY (sex determining region Y)-box 6
ENSMUST00000072804 (Sox6-201) 115471344-115995086 protein_coding
ENSMUST00000106612 (Sox6-202) 115471344-116031047 protein_coding
ENSMUST00000166207 (Sox6-203) 115476658-115846105 protein_coding
ENSMUST00000166877 (Sox6-204) 115471344-116038744 protein_coding
ENSMUST00000169129 (Sox6-205) 115474475-115824707 protein_coding
CIL_0007MN_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
SOX6 UCNEbase 7955 7:28406228-28744653
GeneTranscriptPositionBiotype
ENSDARG00000015536 (sox6)
SRY-box containing gene 6
ENSDART00000100998 (sox6-201) 28416416-28575259 protein_coding
ENSDART00000149843 (sox6-003) 28570617-28575230 retained_intron
ENSDART00000150068 (sox6-001) 28377343-28578229 protein_coding
ENSDART00000150225 (sox6-002) 28498301-28550455 retained_intron
ENSDARG00000056587 (cyp2r1)
cytochrome P450, family 2, subfamily R, polypeptide 1
ENSDART00000079091 (cyp2r1-001) 28817515-28823102 protein_coding
ENSDART00000148417 (cyp2r1-002) 28581189-28821481 protein_coding
ENSDART00000148782 (cyp2r1-004) 28729079-28821541 protein_coding
ENSDART00000149496 (cyp2r1-003) 28581208-28786596 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007MN_0001ENSG00000254645ENST00000524613ENSG00000254661ENST00000530418ENSG00000254695ENST00000532242ENSG00000254789ENST00000533082ENSG00000254878ENST00000531763ENSG00000254946ENST00000527770CIL_0007MN_0002ENSG00000213785ENST00000525311ENSG00000241943ENST00000469842CIL_0007MN_0003ENSMUSG00000051910ENSMUST00000072804ENSMUST00000106612ENSMUST00000166207ENSMUST00000166877ENSMUST00000169129CIL_0007MN_0004ENSDARG00000015536ENSDART00000100998ENSDART00000149843ENSDART00000150068ENSDART00000150225ENSDARG00000056587ENSDART00000079091ENSDART00000148417ENSDART00000148782ENSDART00000149496
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007MN_0001ENSG00000254645ENST00000524613ENSG00000254661ENST00000530418ENSG00000254695ENST00000532242ENSG00000254789ENST00000533082ENSG00000254878ENST00000531763ENSG00000254946ENST00000527770CIL_0007MN_0002ENSG00000213785ENST00000525311ENSG00000241943ENST00000469842CIL_0007MN_0003ENSMUSG00000051910ENSMUST00000072804ENSMUST00000106612ENSMUST00000166207ENSMUST00000166877ENSMUST00000169129CIL_0007MN_0004ENSDARG00000015536ENSDART00000100998ENSDART00000149843ENSDART00000150068ENSDARG00000056587ENSDART00000079091ENSDART00000148782
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000254645 ENST00000524613 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A 0.016±0.00
ENSG00000254661 ENST00000530418 N/A N/A N/A 0.033±0.00 0.097±0.00 N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 0.888±0.72
ENSG00000254695 ENST00000532242 N/A N/A N/A 0.046±0.00 N/A 0.118±0.00 0.075±0.00 3.828±0.00 N/A N/A N/A N/A 0.174±0.03 0.106±0.00
ENSG00000254789 ENST00000533082 0.124±0.00 N/A 0.632±0.00 N/A N/A N/A N/A 0.723±0.00 N/A 0.768±0.03 N/A 0.083±0.00 0.308±0.00 N/A
ENSG00000254878 ENST00000531763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.586±0.00 0.423±0.17
ENSG00000254946 ENST00000527770 N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A N/A 0.192±0.00 N/A N/A 0.494±0.32 0.290±0.07
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000213785 ENST00000525311 N/A N/A 0.103±0.00 N/A N/A 0.312±0.00 0.056±0.00 0.031±0.00 N/A N/A 0.026±0.00 N/A N/A 0.167±0.00
ENSG00000241943 ENST00000469842 N/A N/A 1.071±0.00 N/A N/A 0.507±0.00 N/A N/A N/A N/A N/A N/A N/A 0.137±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000051910 ENSMUST00000072804 N/A N/A N/A 0.865±0.00 N/A 0.238±0.08 N/A N/A 1.960±0.00 0.143±0.00 N/A 0.319±0.13 0.168±0.00 N/A
ENSMUST00000106612 N/A N/A N/A 0.557±0.00 0.188±0.00 N/A N/A N/A 0.735±0.32 0.077±0.00 N/A 0.355±0.00 N/A N/A
ENSMUST00000166207 N/A N/A N/A 2.003±0.00 N/A N/A N/A N/A N/A N/A N/A 0.368±0.25 0.240±0.00 16.894±16.22
ENSMUST00000166877 0.220±0.00 0.139±0.03 N/A 4.308±0.00 N/A 0.208±0.00 N/A N/A 5.011±0.00 0.103±0.00 N/A 0.348±0.03 0.186±0.13 1.958±0.41
ENSMUST00000169129 N/A 0.291±0.03 N/A N/A N/A N/A N/A N/A 0.338±0.00 N/A N/A 0.123±0.00 0.073±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000015536 ENSDART00000100998 N/A N/A N/A 1.163±0.00 N/A N/A 0.712±0.00 N/A N/A N/A 2.274±0.00 N/A N/A N/A
ENSDART00000149843 N/A N/A N/A N/A N/A N/A N/A N/A 1.330±0.00 N/A N/A N/A N/A N/A
ENSDART00000150068 N/A N/A N/A 1.679±0.57 N/A N/A 0.468±0.08 0.323±0.00 0.355±0.00 N/A 0.625±0.00 N/A N/A N/A
ENSDART00000150225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000056587 ENSDART00000079091 N/A N/A N/A 0.388±0.32 N/A N/A 0.757±0.05 1.606±1.22 9.838±0.00 N/A 1.005±0.00 N/A N/A N/A
ENSDART00000148417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148782 N/A N/A N/A 0.440±0.00 N/A N/A 0.583±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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