C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY-box containing gene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000150068 sox6-001 ENSDARG00000015536 7955 + 7:28377343-28578229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000150068
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000150068 1.679±0.57 0.468±0.08 0.323±0.00 0.355±0.00 0.625±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072804 Sox6-201 protein_coding Mus_musculus 0 662
ENSMUST00000079063 Sox11-001 protein_coding Mus_musculus 0.000000000009 79
ENSMUST00000106612 Sox6-202 protein_coding Mus_musculus 0 843
ENSMUST00000166207 Sox6-203 protein_coding Mus_musculus 0 662
ENSMUST00000166877 Sox6-204 protein_coding Mus_musculus 0 843
ENSMUST00000169129 Sox6-205 protein_coding Mus_musculus 0 843
ENST00000316399 SOX6-001 protein_coding Homo_sapiens 0 697
ENST00000330949 SOX1-001 protein_coding Homo_sapiens 0.00005 55
ENST00000367206 SOX5-006 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000381381 SOX5-201 protein_coding Homo_sapiens 0 270
ENST00000396356 SOX6-201 protein_coding Homo_sapiens 0 693
ENST00000451604 SOX5-002 protein_coding Homo_sapiens 0 270
ENST00000526673 SOX6-010 protein_coding Homo_sapiens 2e-37 159
ENST00000527619 SOX6-003 protein_coding Homo_sapiens 0 787
ENST00000528252 SOX6-002 protein_coding Homo_sapiens 0 787
ENST00000528429 SOX6-012 protein_coding Homo_sapiens 0 693
ENST00000529469 SOX6-008 protein_coding Homo_sapiens 0.0000007 58
ENST00000530378 SOX6-011 nonsense_mediated_decay Homo_sapiens 6.99949e-42 176
ENST00000533411 SOX6-009 protein_coding Homo_sapiens 0 206
ENST00000533658 SOX6-006 processed_transcript Homo_sapiens 3.99931e-42 176
ENST00000533870 SOX6-005 retained_intron Homo_sapiens 2.00386e-43 183
ENST00000537393 SOX5-008 protein_coding Homo_sapiens 0 270
ENST00000541536 SOX5-009 protein_coding Homo_sapiens 0 270
ENST00000541847 SOX5-016 protein_coding Homo_sapiens 3e-37 159
ENST00000545921 SOX5-007 protein_coding Homo_sapiens 0 270
ENST00000546136 SOX5-003 protein_coding Homo_sapiens 0 270

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