C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007SH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs631 VISTA 9606 8:36800333-37401205
GeneTranscriptPositionBiotype
ENSG00000215262 (KCNU1)
potassium channel, subfamily U, member 1 		ENST00000399881 (KCNU1-001) 36784374-36936128 protein_coding
ENST00000518904 (KCNU1-009) 36928905-36931145 protein_coding
ENST00000522372 (KCNU1-002) 36784383-36936125 nonsense_mediated_decay
ENST00000522417 (KCNU1-003) 36784399-36807404 nonsense_mediated_decay
ENST00000523973 (KCNU1-005) 36784324-36814400 protein_coding
ENSG00000219491 (TPT1P8)
tumor protein, translationally-controlled 1 pseudogene 8 		ENST00000510120 (TPT1P8-001) 36888482-36889307 unprocessed_pseudogene
ENSG00000243503 (AC090453.1)
 ENST00000495560 (AC090453.1-001) 36987977-36988412 processed_pseudogene
ENSG00000253123 (RP11-527N22.1)
 ENST00000518765 (RP11-527N22.1-002) 37330672-37331984 lincRNA
ENST00000624599 (RP11-527N22.1-001) 37326575-37330837 TEC
ENSG00000254038 (RP11-419C23.1)
 ENST00000523411 (RP11-419C23.1-001) 37067441-37069418 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007SH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs631 VISTA 10090 8:26084787-26685647
GeneTranscriptPositionBiotype
ENSMUSG00000013878 (Rnf170)
ring finger protein 170 		ENSMUST00000014022 (Rnf170-001) 26119368-26143871 protein_coding
ENSMUST00000110573 (Rnf170-007) 26120480-26126239 protein_coding
ENSMUST00000110575 (Rnf170-005) 26119476-26129546 protein_coding
ENSMUST00000110579 (Rnf170-003) 26119566-26142648 nonsense_mediated_decay
ENSMUST00000124757 (Rnf170-002) 26119380-26141325 nonsense_mediated_decay
ENSMUST00000124867 (Rnf170-004) 26123877-26141078 nonsense_mediated_decay
ENSMUST00000131138 (Rnf170-009) 26119388-26129155 protein_coding
ENSMUST00000140819 (Rnf170-008) 26119664-26129155 protein_coding
ENSMUST00000153528 (Rnf170-006) 26119383-26141124 protein_coding
ENSMUSG00000037214 (Thap1)
THAP domain containing, apoptosis associated protein 1 		ENSMUST00000036807 (Thap1-001) 26158212-26162940 protein_coding
ENSMUST00000127536 (Thap1-003) 26158255-26159412 retained_intron
ENSMUST00000130231 (Thap1-002) 26158233-26162775 protein_coding
ENSMUSG00000037234 (Hook3)
hook homolog 3 (Drosophila) 		ENSMUST00000037182 (Hook3-001) 26021421-26119224 protein_coding
ENSMUST00000147613 (Hook3-002) 26038080-26070275 protein_coding
ENSMUST00000152144 (Hook3-003) 26038089-26044570 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SH_0001ENSG00000215262ENST00000399881ENST00000518904ENST00000522372ENST00000522417ENST00000523973ENSG00000219491ENST00000510120ENSG00000243503ENST00000495560ENSG00000253123ENST00000518765ENST00000624599ENSG00000254038ENST00000523411CIL_0007SH_0002ENSMUSG00000013878ENSMUST00000014022ENSMUST00000110573ENSMUST00000110575ENSMUST00000110579ENSMUST00000124757ENSMUST00000124867ENSMUST00000131138ENSMUST00000140819ENSMUST00000153528ENSMUSG00000037214ENSMUST00000036807ENSMUST00000127536ENSMUST00000130231ENSMUSG00000037234ENSMUST00000037182ENSMUST00000147613ENSMUST00000152144
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007SH_0001ENSG00000215262ENST00000399881ENST00000522372ENSG00000219491ENST00000510120ENSG00000243503ENST00000495560ENSG00000253123ENST00000518765ENST00000624599ENSG00000254038ENST00000523411CIL_0007SH_0002ENSMUSG00000013878ENSMUST00000014022ENSMUST00000110579ENSMUST00000124757ENSMUST00000131138ENSMUST00000140819ENSMUST00000153528ENSMUSG00000037214ENSMUST00000036807ENSMUST00000127536ENSMUST00000130231ENSMUSG00000037234ENSMUST00000037182ENSMUST00000147613
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000215262 ENST00000399881 N/A N/A N/A 0.003±0.00 0.036±0.00 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A 4.188±0.83
ENST00000518904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522372 N/A N/A N/A 0.000±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.492±0.00
ENST00000522417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000219491 ENST00000510120 N/A 0.019±0.00 N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00
ENSG00000243503 ENST00000495560 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A 0.064±0.00
ENSG00000253123 ENST00000518765 0.308±0.00 N/A N/A N/A N/A N/A 0.129±0.00 0.329±0.00 0.661±0.00 N/A N/A 0.259±0.02 0.060±0.00 N/A
ENST00000624599 N/A N/A N/A 0.084±0.00 0.073±0.02 0.053±0.00 0.068±0.04 0.116±0.00 0.004±0.00 0.105±0.06 0.129±0.00 0.135±0.07 0.057±0.02 0.130±0.00
ENSG00000254038 ENST00000523411 N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A N/A N/A 0.075±0.00 0.093±0.00 0.038±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000013878 ENSMUST00000014022 3.331±0.22 1.741±0.56 4.120±0.17 3.301±0.53 1.981±0.36 1.319±0.30 1.902±0.33 2.245±0.20 2.209±0.85 2.508±0.33 5.581±1.09 3.492±1.07 2.963±1.44 1.835±0.13
ENSMUST00000110573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110575 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.505±0.68 N/A N/A
ENSMUST00000124757 N/A 7.613±1.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.364±0.00 N/A N/A
ENSMUST00000124867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131138 N/A 11.009±0.00 N/A N/A N/A N/A N/A N/A 1.410±0.00 N/A N/A N/A N/A N/A
ENSMUST00000140819 2.010±0.00 3.015±1.29 N/A N/A 1.632±0.02 1.745±0.20 N/A N/A 1.133±0.00 1.570±0.01 N/A 1.466±0.00 N/A N/A
ENSMUST00000153528 N/A 1.815±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.336±0.00 N/A
ENSMUSG00000037214 ENSMUST00000036807 2.737±0.33 5.054±1.65 3.054±0.20 5.416±0.00 2.847±0.31 2.513±0.48 1.958±0.18 2.876±0.42 2.816±0.84 3.048±0.38 1.175±0.44 3.845±1.64 5.430±3.76 10.010±0.85
ENSMUST00000127536 N/A 2.252±0.00 N/A N/A N/A N/A N/A N/A 1.008±0.19 N/A N/A 1.652±0.00 N/A N/A
ENSMUST00000130231 N/A N/A N/A 1.726±0.00 N/A N/A N/A N/A N/A N/A N/A 2.580±0.00 3.230±0.00 8.930±0.00
ENSMUSG00000037234 ENSMUST00000037182 2.075±1.23 3.835±1.01 1.783±0.31 4.093±2.76 1.866±0.50 1.756±0.64 1.549±0.15 1.519±0.67 2.445±1.15 3.583±1.02 2.976±1.08 3.791±1.40 3.429±0.48 0.369±0.15
ENSMUST00000147613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.638±0.00 N/A
ENSMUST00000152144 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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