C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 170
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000013878 Rnf170 10090 + 8:26119368-26143871 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014022 Rnf170-001 26119368-26143871 protein_coding
  ENSMUST00000110573 Rnf170-007 26120480-26126239 protein_coding
  ENSMUST00000110575 Rnf170-005 26119476-26129546 protein_coding
  ENSMUST00000110579 Rnf170-003 26119566-26142648 nonsense_mediated_decay
  ENSMUST00000124757 Rnf170-002 26119380-26141325 nonsense_mediated_decay
  ENSMUST00000124867 Rnf170-004 26123877-26141078 nonsense_mediated_decay
  ENSMUST00000131138 Rnf170-009 26119388-26129155 protein_coding
  ENSMUST00000140819 Rnf170-008 26119664-26129155 protein_coding
  ENSMUST00000153528 Rnf170-006 26119383-26141124 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014022ENSMUST00000110579ENSMUST00000124757ENSMUST00000131138ENSMUST00000140819ENSMUST00000153528
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014022 3.331±0.22 1.741±0.56 4.120±0.17 3.301±0.53 1.981±0.36 1.319±0.30 1.902±0.33 2.245±0.20 2.209±0.85 2.508±0.33 5.581±1.09 3.492±1.07 2.963±1.44 1.835±0.13
ENSMUST00000110579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.505±0.68 N/A N/A
ENSMUST00000124757 N/A 7.613±1.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.364±0.00 N/A N/A
ENSMUST00000131138 N/A 11.009±0.00 N/A N/A N/A N/A N/A N/A 1.410±0.00 N/A N/A N/A N/A N/A
ENSMUST00000140819 2.010±0.00 3.015±1.29 N/A N/A 1.632±0.02 1.745±0.20 N/A N/A 1.133±0.00 1.570±0.01 N/A 1.466±0.00 N/A N/A
ENSMUST00000153528 N/A 1.815±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.336±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SH CIL_0007SH_0002 VISTA 8:26084787-26685647

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028476 rnf170 ring finger protein 170 protein_coding Danio_rerio
ENSG00000120925 RNF170 ring finger protein 170 protein_coding Homo_sapiens

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