C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 170
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000014022 Rnf170-001 ENSMUSG00000013878 10090 + 8:26119368-26143871 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014022
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014022 3.331±0.22 1.741±0.56 4.120±0.17 3.301±0.53 1.981±0.36 1.319±0.30 1.902±0.33 2.245±0.20 2.209±0.85 2.508±0.33 5.581±1.09 3.492±1.07 2.963±1.44 1.835±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SH CIL_0007SH_0002 VISTA 8:26084787-26685647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240159 RNF170-004 nonsense_mediated_decay Homo_sapiens 0 569
ENST00000319073 RNF170-201 protein_coding Homo_sapiens 0 534
ENST00000526349 RNF170-003 protein_coding Homo_sapiens 0 821
ENST00000527424 RNF170-001 protein_coding Homo_sapiens 0 948
ENST00000528318 RNF170-002 retained_intron Homo_sapiens 0 523
ENST00000534961 RNF170-202 protein_coding Homo_sapiens 0 948

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