C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 170
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124757 Rnf170-002 ENSMUSG00000013878 10090 + 8:26119380-26141325 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalOvaryENSMUST00000124757
Transcript ID Adrenal Ovary
ENSMUST00000124757 7.613±1.38 1.364±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SH CIL_0007SH_0002 VISTA 8:26084787-26685647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240159 RNF170-004 nonsense_mediated_decay Homo_sapiens 0 819
ENST00000319073 RNF170-201 protein_coding Homo_sapiens 0 819
ENST00000526349 RNF170-003 protein_coding Homo_sapiens 0 534
ENST00000527424 RNF170-001 protein_coding Homo_sapiens 0 534
ENST00000528318 RNF170-002 retained_intron Homo_sapiens 3e-33 147
ENST00000534961 RNF170-202 protein_coding Homo_sapiens 0 534

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