C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ring finger protein 170
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153528 Rnf170-006 ENSMUSG00000013878 10090 + 8:26119383-26141124 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalPlacentaENSMUST00000153528
Transcript ID Adrenal Placenta
ENSMUST00000153528 1.815±0.00 3.336±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SH CIL_0007SH_0002 VISTA 8:26084787-26685647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240159 RNF170-004 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000319073 RNF170-201 protein_coding Homo_sapiens 0 508
ENST00000526349 RNF170-003 protein_coding Homo_sapiens 0 797
ENST00000527424 RNF170-001 protein_coding Homo_sapiens 0 795
ENST00000528318 RNF170-002 retained_intron Homo_sapiens 0 433
ENST00000534961 RNF170-202 protein_coding Homo_sapiens 0 795

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