C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007UV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1340 VISTA 9606 6:20566874-21170298
GeneTranscriptPositionBiotype
ENSG00000225832 (RP3-348I23.3)
 ENST00000454835 (RP3-348I23.3-001) 20722328-20723655 processed_pseudogene
ENSG00000233848 (RP3-348I23.2)
 ENST00000421167 (RP3-348I23.2-001) 20756103-20800694 antisense
CIL_0007UV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1340 VISTA 10090 13:29309186-29911829
GeneTranscriptPositionBiotype
ENSMUSG00000006191 (Cdkal1)
CDK5 regulatory subunit associated protein 1-like 1 		ENSMUST00000006353 (Cdkal1-001) 29325301-29855674 protein_coding
ENSMUST00000091674 (Cdkal1-004) 29802441-29855663 protein_coding
ENSMUST00000110323 (Cdkal1-005) 29402593-29474607 protein_coding
ENSMUST00000123641 (Cdkal1-011) 29708841-29855657 retained_intron
ENSMUST00000124532 (Cdkal1-010) 29777296-29855431 protein_coding
ENSMUST00000129231 (Cdkal1-009) 29836995-29855665 nonsense_mediated_decay
ENSMUST00000131792 (Cdkal1-003) 29473868-29855643 retained_intron
ENSMUST00000137225 (Cdkal1-008) 29521837-29855639 nonsense_mediated_decay
ENSMUST00000140278 (Cdkal1-007) 29191746-29855647 nonsense_mediated_decay
ENSMUST00000153086 (Cdkal1-006) 29514207-29855643 retained_intron
ENSMUST00000154209 (Cdkal1-002) 29443776-29517454 protein_coding
ENSMUSG00000016477 (E2f3)
E2F transcription factor 3 		ENSMUST00000102948 (E2f3-001) 29906575-29985668 protein_coding
ENSMUST00000146092 (E2f3-002) 29918784-29984219 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UV_0001ENSG00000225832ENST00000454835ENSG00000233848ENST00000421167CIL_0007UV_0002ENSMUSG00000006191ENSMUST00000006353ENSMUST00000091674ENSMUST00000110323ENSMUST00000123641ENSMUST00000124532ENSMUST00000129231ENSMUST00000131792ENSMUST00000137225ENSMUST00000140278ENSMUST00000153086ENSMUST00000154209ENSMUSG00000016477ENSMUST00000102948ENSMUST00000146092
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007UV_0001ENSG00000225832ENST00000454835ENSG00000233848ENST00000421167CIL_0007UV_0002ENSMUSG00000006191ENSMUST00000006353ENSMUST00000123641ENSMUST00000129231ENSMUST00000131792ENSMUST00000137225ENSMUST00000153086ENSMUSG00000016477ENSMUST00000102948
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000225832 ENST00000454835 0.044±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.391±0.00 0.122±0.00 N/A N/A N/A
ENSG00000233848 ENST00000421167 0.037±0.00 0.039±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006191 ENSMUST00000006353 2.074±0.31 0.877±0.46 3.352±0.80 1.211±0.27 1.513±0.52 0.862±0.30 2.344±0.22 2.265±0.26 1.460±0.21 1.989±0.50 5.504±0.48 1.339±1.15 2.368±0.94 8.118±2.38
ENSMUST00000091674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123641 N/A N/A N/A 2.397±0.00 N/A N/A N/A N/A N/A N/A N/A 2.994±0.00 4.331±0.00 13.546±0.00
ENSMUST00000124532 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129231 N/A N/A N/A N/A N/A 0.726±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131792 N/A 0.300±0.09 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.728±0.14 N/A N/A
ENSMUST00000137225 N/A N/A N/A N/A 0.269±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153086 N/A 0.103±0.00 N/A N/A 0.108±0.00 0.113±0.03 N/A N/A N/A N/A N/A 0.127±0.01 N/A N/A
ENSMUST00000154209 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000016477 ENSMUST00000102948 0.655±0.34 1.147±0.22 1.517±1.11 6.313±0.67 1.246±0.56 1.711±0.54 0.722±0.00 0.546±0.48 1.908±1.21 0.759±0.83 N/A 2.121±1.00 2.416±1.55 0.266±0.23
ENSMUST00000146092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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