C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006353 Cdkal1-001 ENSMUSG00000006191 10090 - 13:29325301-29855674 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000006353
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006353 2.074±0.31 0.877±0.46 3.352±0.80 1.211±0.27 1.513±0.52 0.862±0.30 2.344±0.22 2.265±0.26 1.460±0.21 1.989±0.50 5.504±0.48 1.339±1.15 2.368±0.94 8.118±2.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084D CIL_00084D_0002 VISTA 13:28658215-29260360
CIL_0005MW CIL_0005MW_0002 CGP 13:28948919-29855674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0005791 IDA rough endoplasmic reticulum
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0035598 IMP N6-threonylcarbomyladenosine methylthiotransferase activity
GO:0035600 IMP tRNA methylthiolation
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding
GO:1990145 IMP maintenance of translational fidelity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274695 CDKAL1-201 protein_coding Homo_sapiens 0 1916
ENST00000378610 CDKAL1-001 protein_coding Homo_sapiens 0 1888
ENST00000613575 CDKAL1-202 protein_coding Homo_sapiens 0 337

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