C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007YN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs845 VISTA 9606 17:12172466-12773269
GeneTranscriptPositionBiotype
ENSG00000179136 (LINC00670)
long intergenic non-protein coding RNA 670 		ENST00000313495 (LINC00670-001) 12549782-12637187 lincRNA
ENST00000577679 (LINC00670-002) 12549981-12635782 lincRNA
ENST00000577863 (LINC00670-003) 12635166-12642854 lincRNA
ENSG00000227274 (AC005358.3)
 ENST00000445508 (AC005358.3-001) 12671862-12706135 antisense
ENSG00000265400 (RP11-471L13.2)
 ENST00000585228 (RP11-471L13.2-001) 12201600-12215267 lincRNA
ENSG00000265489 (RP11-1090M7.1)
 ENST00000584772 (RP11-1090M7.1-001) 12760140-12790242 antisense
CIL_0007YN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs845 VISTA 10090 11:65135465-65736246
GeneTranscriptPositionBiotype
ENSMUSG00000020542 (Myocd)
myocardin 		ENSMUST00000101042 (Myocd-002) 65178428-65218559 protein_coding
ENSMUST00000102635 (Myocd-001) 65176561-65269941 protein_coding
ENSMUST00000108695 (Myocd-201) 65176574-65269989 protein_coding
ENSMUST00000144399 (Myocd-005) 65196102-65205467 protein_coding
ENSMUST00000150823 (Myocd-004) 65223734-65269854 processed_transcript
ENSMUST00000151483 (Myocd-003) 65176773-65182157 processed_transcript
ENSMUSG00000020548 (1700086D15Rik)
RIKEN cDNA 1700086D15 gene 		ENSMUST00000020855 (1700086D15Rik-201) 65151910-65159890 protein_coding
ENSMUST00000108696 (1700086D15Rik-001) 65151910-65159891 protein_coding
ENSMUSG00000033352 (Map2k4)
mitogen-activated protein kinase kinase 4 		ENSMUST00000046963 (Map2k4-005) 65688243-65788297 protein_coding
ENSMUST00000125598 (Map2k4-007) 65690333-65719603 protein_coding
ENSMUST00000130009 (Map2k4-002) 65712220-65788285 nonsense_mediated_decay
ENSMUST00000138093 (Map2k4-004) 65719539-65745838 processed_transcript
ENSMUST00000140301 (Map2k4-001) 65696288-65788285 nonsense_mediated_decay
ENSMUST00000140740 (Map2k4-006) 65691728-65697014 processed_transcript
ENSMUST00000152096 (Map2k4-003) 65712219-65788286 protein_coding
ENSMUSG00000033389 (Arhgap44)
Rho GTPase activating protein 44 		ENSMUST00000047463 (Arhgap44-004) 65002039-65162961 protein_coding
ENSMUST00000093001 (Arhgap44-002) 65051475-65162567 protein_coding
ENSMUST00000093002 (Arhgap44-001) 65002040-65162904 protein_coding
ENSMUST00000130420 (Arhgap44-003) 65002041-65059834 protein_coding
ENSMUSG00000082857 (Gm12293)
predicted gene 12293 		ENSMUST00000121898 (Gm12293-001) 65169844-65170433 processed_pseudogene
ENSMUSG00000085162 (Gm12295)
predicted gene 12295 		ENSMUST00000128453 (Gm12295-001) 65277654-65287833 lincRNA
ENSMUST00000130362 (Gm12295-002) 65285936-65365798 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007YN_0001ENSG00000179136ENST00000313495ENST00000577679ENST00000577863ENSG00000227274ENST00000445508ENSG00000265400ENST00000585228ENSG00000265489ENST00000584772CIL_0007YN_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007YN_0001ENSG00000179136ENST00000313495ENST00000577679ENST00000577863ENSG00000227274ENST00000445508ENSG00000265400ENST00000585228ENSG00000265489ENST00000584772CIL_0007YN_0002ENSMUSG00000020542ENSMUST00000101042ENSMUST00000102635ENSMUST00000108695ENSMUST00000144399ENSMUST00000150823ENSMUST00000151483ENSMUSG00000020548ENSMUST00000020855ENSMUST00000108696ENSMUSG00000033352ENSMUST00000046963ENSMUST00000125598ENSMUST00000130009ENSMUST00000140301ENSMUST00000152096ENSMUSG00000033389ENSMUST00000047463ENSMUST00000093002ENSMUST00000130420ENSMUSG00000082857ENSMUST00000121898ENSMUSG00000085162ENSMUST00000128453ENSMUST00000130362
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000179136 ENST00000313495 0.259±0.00 N/A N/A 0.061±0.00 0.017±0.00 0.163±0.00 N/A N/A N/A 0.576±0.00 N/A 0.063±0.06 0.053±0.02 0.220±0.11
ENST00000577679 N/A N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A 0.388±0.13 N/A 0.058±0.00 0.220±0.05 N/A
ENST00000577863 N/A N/A N/A N/A 0.195±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227274 ENST00000445508 0.035±0.00 N/A 0.092±0.00 N/A N/A 0.520±0.00 0.117±0.02 N/A 0.156±0.00 0.042±0.00 N/A 0.148±0.13 N/A 0.038±0.02
ENSG00000265400 ENST00000585228 0.034±0.00 0.105±0.00 N/A N/A 0.017±0.00 N/A 0.047±0.00 0.017±0.00 N/A N/A 0.076±0.00 N/A N/A N/A
ENSG00000265489 ENST00000584772 N/A N/A 0.117±0.00 0.173±0.00 N/A N/A N/A N/A 0.012±0.00 0.131±0.00 0.155±0.00 0.365±0.20 N/A 0.322±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020542 ENSMUST00000101042 0.143±0.00 0.120±0.04 N/A 0.028±0.00 0.152±0.10 2.358±0.42 5.216±1.45 0.171±0.06 0.026±0.01 0.538±0.23 0.018±0.01 3.709±0.68 N/A 0.083±0.03
ENSMUST00000102635 N/A 0.040±0.00 N/A 0.006±0.00 0.224±0.10 N/A N/A N/A 0.020±0.01 0.119±0.00 0.070±0.03 0.952±0.00 0.042±0.03 0.018±0.00
ENSMUST00000108695 0.140±0.00 0.069±0.02 N/A 0.014±0.00 0.039±0.00 0.722±0.30 4.498±0.00 0.082±0.03 0.025±0.02 0.438±0.24 0.044±0.00 1.776±0.74 0.170±0.02 0.135±0.06
ENSMUST00000144399 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.00 N/A
ENSMUST00000150823 N/A N/A N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A
ENSMUST00000151483 N/A 0.078±0.01 N/A 0.008±0.00 N/A N/A N/A 0.035±0.00 0.012±0.01 N/A 0.031±0.01 N/A N/A N/A
ENSMUSG00000020548 ENSMUST00000020855 0.059±0.03 0.035±0.00 0.014±0.00 0.088±0.02 N/A 0.071±0.00 0.015±0.00 0.032±0.01 0.010±0.01 0.183±0.03 0.012±0.00 0.069±0.03 0.019±0.00 1.140±1.08
ENSMUST00000108696 0.059±0.03 0.035±0.00 0.014±0.00 0.088±0.02 N/A 0.072±0.00 0.015±0.00 0.032±0.01 0.010±0.01 0.184±0.03 0.012±0.00 0.070±0.03 0.019±0.00 1.339±1.28
ENSMUSG00000033352 ENSMUST00000046963 5.162±1.07 6.364±3.08 14.265±2.92 17.785±5.68 3.818±2.35 2.768±0.55 4.403±0.28 4.474±0.59 8.233±4.33 6.777±1.89 15.505±1.93 9.245±4.61 15.491±5.48 1.089±0.26
ENSMUST00000125598 N/A N/A N/A 43.468±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 14.887±2.10 N/A
ENSMUST00000130009 N/A N/A N/A N/A N/A 7.661±0.03 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140301 N/A 12.996±1.43 N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.456±0.00 18.577±0.00 N/A
ENSMUST00000140740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152096 N/A N/A N/A 113.141±0.00 N/A N/A N/A N/A N/A N/A N/A 28.807±14.70 73.957±4.68 10.890±0.00
ENSMUSG00000033389 ENSMUST00000047463 2.027±0.19 3.001±0.17 3.809±0.51 5.135±1.85 1.250±0.00 1.043±0.10 3.121±1.56 1.167±0.16 0.608±0.00 7.527±2.28 1.827±0.32 2.475±0.73 4.050±2.97 3.965±0.45
ENSMUST00000093001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000093002 N/A N/A N/A 14.300±0.00 N/A N/A N/A 1.016±0.00 N/A N/A N/A N/A 4.503±2.28 2.489±0.45
ENSMUST00000130420 N/A 1.908±0.00 N/A N/A 0.881±0.00 N/A 1.476±0.00 1.193±0.06 N/A 5.797±0.00 1.633±0.00 2.649±0.31 N/A N/A
ENSMUSG00000082857 ENSMUST00000121898 0.096±0.01 N/A 0.109±0.04 N/A N/A N/A 0.151±0.00 0.106±0.00 N/A 0.304±0.19 N/A 0.183±0.03 0.025±0.00 1.345±1.55
ENSMUSG00000085162 ENSMUST00000128453 0.065±0.05 0.050±0.00 0.633±0.09 0.006±0.00 0.022±0.01 0.102±0.06 0.424±0.25 0.026±0.01 0.006±0.00 0.103±0.02 0.037±0.02 0.260±0.20 0.030±0.03 0.016±0.01
ENSMUST00000130362 N/A N/A N/A 0.017±0.00 N/A N/A 0.636±0.00 N/A N/A 0.112±0.02 0.337±0.10 N/A 0.093±0.00 N/A

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