C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 44
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047463 Arhgap44-004 ENSMUSG00000033389 10090 - 11:65002039-65162961 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047463
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047463 2.027±0.19 3.001±0.17 3.809±0.51 5.135±1.85 1.250±0.00 1.043±0.10 3.121±1.56 1.167±0.16 0.608±0.00 7.527±2.28 1.827±0.32 2.475±0.73 4.050±2.97 3.965±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DU CIL_0008DU_0002 VISTA 11:64598596-65200939
CIL_0008QC CIL_0008QC_0002 VISTA 11:64908855-65510457

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005543 IEA phospholipid binding
GO:0005768 IEA endosome
GO:0007165 IEA signal transduction
GO:0030054 IEA cell junction
GO:0031256 IEA leading edge membrane
GO:0042995 IEA cell projection
GO:0043547 IEA positive regulation of GTPase activity
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000152862 arhgap44-001 protein_coding Danio_rerio 0 907
ENSDART00000098100 arhgap44-201 protein_coding Danio_rerio 0 817
ENST00000262444 ARHGAP44-009 protein_coding Homo_sapiens 0 2983
ENST00000340825 ARHGAP44-001 protein_coding Homo_sapiens 0 2894
ENST00000379672 ARHGAP44-011 protein_coding Homo_sapiens 0 2811
ENST00000538915 ARHGAP44-007 retained_intron Homo_sapiens 0 658
ENST00000544416 ARHGAP44-010 nonsense_mediated_decay Homo_sapiens 0 2111
ENST00000578087 ARHGAP44-005 processed_transcript Homo_sapiens 0 276
ENST00000578442 ARHGAP44-003 retained_intron Homo_sapiens 0 656
ENST00000580768 ARHGAP44-002 nonsense_mediated_decay Homo_sapiens 0 2207
ENST00000581437 ARHGAP44-006 protein_coding Homo_sapiens 0 477
ENST00000583608 ARHGAP44-012 protein_coding Homo_sapiens 0 593
ENST00000616670 ARHGAP44-201 protein_coding Homo_sapiens 0 955

Loading