C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008FF_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs109 VISTA 9606 16:73018413-73620686
GeneTranscriptPositionBiotype
ENSG00000140836 (ZFHX3)
zinc finger homeobox 3 		ENST00000268489 (ZFHX3-001) 72782885-73048375 protein_coding
ENST00000397992 (ZFHX3-002) 72782885-73059698 protein_coding
ENST00000558842 (ZFHX3-004) 73058881-73059222 processed_transcript
ENST00000563625 (ZFHX3-003) 72829509-72889834 retained_intron
ENSG00000197445 (C16orf47)
chromosome 16 open reading frame 47 		ENST00000358463 (C16orf47-001) 73126637-73144447 lincRNA
ENSG00000258582 (RP11-44L9.1)
 ENST00000557393 (RP11-44L9.1-001) 73483317-73487744 lincRNA
ENSG00000258779 (RP11-140I24.1)
 ENST00000554640 (RP11-140I24.1-002) 73387053-73402480 lincRNA
ENST00000555721 (RP11-140I24.1-001) 73386805-73421393 lincRNA
ENST00000561875 (RP11-140I24.1-004) 73387063-73389241 lincRNA
ENST00000562661 (RP11-140I24.1-003) 73387053-73421210 lincRNA
ENSG00000259971 (RP11-44L9.3)
 ENST00000564291 (RP11-44L9.3-001) 73511176-73511654 lincRNA
ENSG00000260687 (RP11-44L9.2)
 ENST00000562748 (RP11-44L9.2-001) 73499309-73499763 lincRNA
ENSG00000260848 (CTD-2009A10.1)
 ENST00000567227 (CTD-2009A10.1-001) 73543941-73558522 lincRNA
ENSG00000260880 (HCCAT5)
hepatocellular carcinoma associated transcript 5 (non-protein coding) 		ENST00000569990 (HCCAT5-001) 73092349-73093774 lincRNA
ENSG00000261227 (AC140912.1)
 ENST00000561802 (AC140912.1-001) 73232762-73233970 lincRNA
ENST00000577171 (AC140912.1-002) 73232055-73233108 lincRNA
ENSG00000271009 (RP11-346C20.3)
 ENST00000604855 (RP11-346C20.3-001) 73060470-73062316 lincRNA
ENSG00000272250 (RP11-346C20.4)
 ENST00000606272 (RP11-346C20.4-001) 73060245-73060759 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0008FF_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs109 VISTA 10090 8:108166096-108768543
GeneTranscriptPositionBiotype
ENSMUSG00000038872 (Zfhx3)
zinc finger homeobox 3 		ENSMUST00000043896 (Zfhx3-001) 108714644-108961630 protein_coding
ENSMUST00000188994 (Zfhx3-002) 108703100-108800270 protein_coding

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008FF_0001ENSG00000140836ENST00000268489ENST00000397992ENST00000558842ENST00000563625ENSG00000197445ENST00000358463ENSG00000258582ENST00000557393ENSG00000258779ENST00000554640ENST00000555721ENST00000561875ENST00000562661ENSG00000259971ENST00000564291ENSG00000260687ENST00000562748ENSG00000260848ENST00000567227ENSG00000260880ENST00000569990ENSG00000261227ENST00000561802ENST00000577171ENSG00000271009ENST00000604855ENSG00000272250ENST00000606272CIL_0008FF_0002ENSMUSG00000038872ENSMUST00000043896ENSMUST00000188994
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008FF_0001ENSG00000140836ENST00000268489ENST00000397992ENSG00000197445ENST00000358463ENSG00000258582ENST00000557393ENSG00000258779ENST00000554640ENST00000555721ENST00000561875ENST00000562661ENSG00000259971ENST00000564291ENSG00000260687ENST00000562748ENSG00000260848ENST00000567227ENSG00000260880ENST00000569990ENSG00000261227ENST00000561802ENST00000577171ENSG00000271009ENST00000604855ENSG00000272250ENST00000606272CIL_0008FF_0002ENSMUSG00000038872ENSMUST00000043896
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140836 ENST00000268489 2.846±0.00 1.535±0.00 0.574±0.00 0.467±0.19 2.931±0.00 1.923±0.62 0.941±0.58 1.264±0.27 0.396±0.00 1.136±0.04 2.810±1.01 1.031±0.48 1.095±0.49 1.211±0.73
ENST00000397992 1.459±0.00 0.340±0.00 0.520±0.00 0.356±0.24 1.332±0.00 1.257±0.47 0.573±0.39 1.088±0.00 0.557±0.07 1.489±0.41 4.108±0.00 0.990±0.64 2.001±1.82 0.878±0.00
ENST00000558842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197445 ENST00000358463 0.127±0.00 0.105±0.00 N/A 0.123±0.08 0.082±0.00 0.087±0.00 0.036±0.00 0.094±0.00 0.068±0.00 0.082±0.00 N/A N/A 0.082±0.01 0.150±0.00
ENSG00000258582 ENST00000557393 N/A 0.686±0.00 N/A 0.343±0.00 0.411±0.00 0.212±0.00 0.396±0.00 0.375±0.00 0.102±0.00 0.026±0.00 0.075±0.00 0.117±0.00 N/A 0.131±0.00
ENSG00000258779 ENST00000554640 0.036±0.00 0.131±0.00 N/A 0.038±0.00 0.020±0.00 0.046±0.00 0.023±0.01 0.100±0.00 0.026±0.00 0.017±0.00 N/A 0.038±0.00 N/A N/A
ENST00000555721 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.677±0.03
ENST00000561875 N/A N/A N/A N/A N/A N/A N/A N/A 0.451±0.00 N/A N/A N/A N/A N/A
ENST00000562661 N/A N/A N/A 0.077±0.00 N/A N/A N/A N/A N/A N/A 0.248±0.00 N/A N/A 2.590±0.00
ENSG00000259971 ENST00000564291 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.660±0.00 N/A N/A N/A N/A
ENSG00000260687 ENST00000562748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.121±0.00
ENSG00000260848 ENST00000567227 N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A 0.043±0.00
ENSG00000260880 ENST00000569990 N/A 0.076±0.00 N/A 0.044±0.00 N/A 0.037±0.00 N/A N/A N/A 0.256±0.00 0.167±0.00 N/A 0.035±0.00 0.045±0.01
ENSG00000261227 ENST00000561802 N/A N/A N/A N/A N/A 0.296±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577171 N/A 0.034±0.00 N/A 0.377±0.07 N/A N/A N/A N/A N/A N/A N/A 0.065±0.04 0.107±0.00 N/A
ENSG00000271009 ENST00000604855 0.199±0.00 0.051±0.00 0.204±0.00 0.077±0.01 0.084±0.00 0.174±0.06 0.040±0.01 0.096±0.00 0.475±0.40 0.156±0.14 0.197±0.00 0.162±0.04 0.116±0.06 0.178±0.02
ENSG00000272250 ENST00000606272 0.363±0.00 N/A N/A 0.127±0.05 N/A 1.196±0.00 0.121±0.07 0.301±0.00 N/A 0.824±0.00 0.523±0.00 0.587±0.07 0.341±0.06 0.140±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038872 ENSMUST00000043896 1.185±0.24 4.956±0.44 1.515±0.52 5.854±5.84 1.095±0.52 2.505±0.48 0.586±0.11 0.755±0.10 0.465±0.33 3.606±0.21 0.486±0.08 1.461±0.60 0.880±0.31 0.587±0.34
ENSMUST00000188994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading