C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008I8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs16 VISTA 9606 16:72647001-73248646
GeneTranscriptPositionBiotype
ENSG00000140836 (ZFHX3)
zinc finger homeobox 3 		ENST00000268489 (ZFHX3-001) 72782885-73048375 protein_coding
ENST00000397992 (ZFHX3-002) 72782885-73059698 protein_coding
ENST00000558842 (ZFHX3-004) 73058881-73059222 processed_transcript
ENST00000563625 (ZFHX3-003) 72829509-72889834 retained_intron
ENSG00000197445 (C16orf47)
chromosome 16 open reading frame 47 		ENST00000358463 (C16orf47-001) 73126637-73144447 lincRNA
ENSG00000259209 (RP5-991G20.2)
 ENST00000558618 (RP5-991G20.2-001) 72806983-72809639 antisense
ENST00000620814 (RP5-991G20.2-003) 72805998-72809872 antisense
ENST00000624370 (RP5-991G20.2-004) 72807045-72808118 antisense
ENSG00000259768 (RP5-991G20.1)
 ENST00000563328 (RP5-991G20.1-001) 72665170-72791624 antisense
ENSG00000260880 (HCCAT5)
hepatocellular carcinoma associated transcript 5 (non-protein coding) 		ENST00000569990 (HCCAT5-001) 73092349-73093774 lincRNA
ENSG00000261008 (AC004158.2)
 ENST00000561611 (AC004158.2-002) 72425485-72665004 lincRNA
ENST00000563770 (AC004158.2-005) 72479751-72627686 lincRNA
ENST00000563823 (AC004158.2-006) 72523332-72627686 lincRNA
ENST00000570035 (AC004158.2-001) 72522138-72665009 lincRNA
ENST00000570152 (AC004158.2-004) 72570481-72664949 lincRNA
ENST00000624829 (AC004158.2-007) 72283301-72664947 lincRNA
ENSG00000261227 (AC140912.1)
 ENST00000561802 (AC140912.1-001) 73232762-73233970 lincRNA
ENST00000577171 (AC140912.1-002) 73232055-73233108 lincRNA
ENSG00000261764 (KRT18P18)
keratin 18 pseudogene 18 		ENST00000565278 (KRT18P18-001) 72728616-72729894 transcribed_processed_pseudogene
ENSG00000271009 (RP11-346C20.3)
 ENST00000604855 (RP11-346C20.3-001) 73060470-73062316 lincRNA
ENSG00000272250 (RP11-346C20.4)
 ENST00000606272 (RP11-346C20.4-001) 73060245-73060759 lincRNA
ENSG00000272330 (AC002044.4)
 ENST00000606707 (AC002044.4-001) 73014319-73014476 sense_intronic
ENSG00000279206 (RP5-991G20.6)
 ENST00000624116 (RP5-991G20.6-001) 72772673-72773272 lincRNA
ENSG00000279591 (AC002044.1)
 ENST00000624910 (AC002044.1-001) 73015047-73016016 TEC
ENSG00000279757 (CTD-2326C4.1)
 ENST00000623805 (CTD-2326C4.1-001) 72973374-72973832 TEC
ENSG00000280092 (AC002044.3)
 ENST00000623314 (AC002044.3-001) 73005601-73006141 TEC
CIL_0008I8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs16 VISTA 10090 8:108502401-109104649
GeneTranscriptPositionBiotype
ENSMUSG00000038872 (Zfhx3)
zinc finger homeobox 3 		ENSMUST00000043896 (Zfhx3-001) 108714644-108961630 protein_coding
ENSMUST00000188994 (Zfhx3-002) 108703100-108800270 protein_coding
ENSMUSG00000093697 (Gm20686)
predicted gene 20686 		ENSMUST00000175846 (Gm20686-001) 108918264-108921874 antisense
ENSMUSG00000097393 (D030068K23Rik)
RIKEN cDNA D030068K23 gene 		ENSMUST00000180382 (D030068K23Rik-201) 109075223-109231047 lincRNA
ENSMUST00000180524 (D030068K23Rik-202) 109075222-109253639 lincRNA
ENSMUST00000181098 (D030068K23Rik-203) 109249866-109273811 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008I8_0001ENSG00000140836ENST00000268489ENST00000397992ENST00000558842ENST00000563625ENSG00000197445ENST00000358463ENSG00000259209ENST00000558618ENST00000620814ENST00000624370ENSG00000259768ENST00000563328ENSG00000260880ENST00000569990ENSG00000261008ENST00000561611ENST00000563770ENST00000563823ENST00000570035ENST00000570152ENST00000624829ENSG00000261227ENST00000561802ENST00000577171ENSG00000261764ENST00000565278ENSG00000271009ENST00000604855ENSG00000272250ENST00000606272ENSG00000272330ENST00000606707ENSG00000279206ENST00000624116ENSG00000279591ENST00000624910ENSG00000279757ENST00000623805ENSG00000280092ENST00000623314CIL_0008I8_0002ENSMUSG00000038872ENSMUST00000043896ENSMUST00000188994ENSMUSG00000093697ENSMUST00000175846ENSMUSG00000097393ENSMUST00000180382ENSMUST00000180524ENSMUST00000181098
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008I8_0001ENSG00000140836ENST00000268489ENST00000397992ENSG00000197445ENST00000358463ENSG00000259209ENST00000558618ENST00000620814ENST00000624370ENSG00000259768ENST00000563328ENSG00000260880ENST00000569990ENSG00000261008ENST00000561611ENST00000563770ENST00000563823ENST00000570035ENST00000624829ENSG00000261227ENST00000561802ENST00000577171ENSG00000261764ENST00000565278ENSG00000271009ENST00000604855ENSG00000272250ENST00000606272ENSG00000272330ENST00000606707ENSG00000279206ENST00000624116ENSG00000279591ENST00000624910ENSG00000279757ENST00000623805ENSG00000280092ENST00000623314CIL_0008I8_0002ENSMUSG00000038872ENSMUST00000043896ENSMUSG00000093697ENSMUST00000175846ENSMUSG00000097393ENSMUST00000180382ENSMUST00000180524ENSMUST00000181098
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140836 ENST00000268489 2.846±0.00 1.535±0.00 0.574±0.00 0.467±0.19 2.931±0.00 1.923±0.62 0.941±0.58 1.264±0.27 0.396±0.00 1.136±0.04 2.810±1.01 1.031±0.48 1.095±0.49 1.211±0.73
ENST00000397992 1.459±0.00 0.340±0.00 0.520±0.00 0.356±0.24 1.332±0.00 1.257±0.47 0.573±0.39 1.088±0.00 0.557±0.07 1.489±0.41 4.108±0.00 0.990±0.64 2.001±1.82 0.878±0.00
ENST00000558842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197445 ENST00000358463 0.127±0.00 0.105±0.00 N/A 0.123±0.08 0.082±0.00 0.087±0.00 0.036±0.00 0.094±0.00 0.068±0.00 0.082±0.00 N/A N/A 0.082±0.01 0.150±0.00
ENSG00000259209 ENST00000558618 N/A 0.114±0.00 N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A 0.132±0.00 0.312±0.00
ENST00000620814 N/A 0.139±0.00 N/A N/A 0.393±0.37 N/A 0.056±0.00 N/A N/A 0.107±0.00 N/A 0.110±0.05 N/A 0.959±0.12
ENST00000624370 0.094±0.00 0.045±0.00 0.788±0.00 0.094±0.08 0.385±0.32 1.271±0.00 0.250±0.16 0.023±0.00 1.045±0.00 0.737±0.72 0.613±0.00 0.151±0.06 0.031±0.00 0.324±0.04
ENSG00000259768 ENST00000563328 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.321±0.20 N/A 2.146±0.00
ENSG00000260880 ENST00000569990 N/A 0.076±0.00 N/A 0.044±0.00 N/A 0.037±0.00 N/A N/A N/A 0.256±0.00 0.167±0.00 N/A 0.035±0.00 0.045±0.01
ENSG00000261008 ENST00000561611 N/A N/A N/A N/A N/A N/A N/A N/A 0.244±0.00 N/A N/A 0.072±0.00 0.027±0.00 N/A
ENST00000563770 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00
ENST00000563823 N/A N/A N/A N/A 0.525±0.39 N/A N/A N/A N/A 0.049±0.00 N/A N/A N/A N/A
ENST00000570035 N/A N/A N/A N/A 0.083±0.00 N/A N/A 0.388±0.00 0.013±0.00 N/A N/A N/A 0.053±0.00 N/A
ENST00000570152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624829 0.064±0.00 0.141±0.00 N/A N/A 0.460±0.00 0.470±0.34 0.036±0.00 0.183±0.00 N/A N/A 0.027±0.00 0.057±0.02 0.022±0.01 N/A
ENSG00000261227 ENST00000561802 N/A N/A N/A N/A N/A 0.296±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000577171 N/A 0.034±0.00 N/A 0.377±0.07 N/A N/A N/A N/A N/A N/A N/A 0.065±0.04 0.107±0.00 N/A
ENSG00000261764 ENST00000565278 N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A 0.022±0.00
ENSG00000271009 ENST00000604855 0.199±0.00 0.051±0.00 0.204±0.00 0.077±0.01 0.084±0.00 0.174±0.06 0.040±0.01 0.096±0.00 0.475±0.40 0.156±0.14 0.197±0.00 0.162±0.04 0.116±0.06 0.178±0.02
ENSG00000272250 ENST00000606272 0.363±0.00 N/A N/A 0.127±0.05 N/A 1.196±0.00 0.121±0.07 0.301±0.00 N/A 0.824±0.00 0.523±0.00 0.587±0.07 0.341±0.06 0.140±0.00
ENSG00000272330 ENST00000606707 0.427±0.00 0.395±0.00 N/A N/A N/A 0.227±0.00 N/A 0.438±0.00 N/A N/A N/A 4.831±4.55 0.641±0.00 0.613±0.00
ENSG00000279206 ENST00000624116 0.109±0.00 0.070±0.00 N/A 0.014±0.00 0.162±0.00 0.820±0.00 N/A N/A N/A N/A N/A 0.048±0.00 0.087±0.00 0.077±0.00
ENSG00000279591 ENST00000624910 0.396±0.00 0.501±0.00 0.276±0.00 0.116±0.00 0.365±0.25 0.237±0.02 0.139±0.00 0.474±0.00 0.082±0.01 0.124±0.00 0.357±0.31 0.405±0.22 0.462±0.00 0.250±0.02
ENSG00000279757 ENST00000623805 0.139±0.00 0.212±0.00 N/A 0.433±0.20 1.567±1.46 0.066±0.00 0.100±0.00 0.179±0.00 0.032±0.00 0.639±0.61 N/A 0.180±0.02 0.236±0.00 0.121±0.04
ENSG00000280092 ENST00000623314 0.332±0.00 0.366±0.00 0.603±0.00 0.065±0.00 0.647±0.43 0.195±0.09 0.101±0.00 0.337±0.00 1.417±0.00 0.356±0.27 0.632±0.00 0.417±0.48 0.234±0.00 0.298±0.14
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038872 ENSMUST00000043896 1.185±0.24 4.956±0.44 1.515±0.52 5.854±5.84 1.095±0.52 2.505±0.48 0.586±0.11 0.755±0.10 0.465±0.33 3.606±0.21 0.486±0.08 1.461±0.60 0.880±0.31 0.587±0.34
ENSMUST00000188994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000093697 ENSMUST00000175846 0.135±0.07 0.352±0.12 N/A 0.176±0.06 0.100±0.00 N/A 0.245±0.10 0.085±0.00 0.148±0.05 0.134±0.00 0.108±0.02 N/A 0.072±0.06 0.107±0.04
ENSMUSG00000097393 ENSMUST00000180382 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.017±0.00 N/A 0.071±0.03 0.012±0.00 N/A
ENSMUST00000180524 N/A N/A 0.002±0.00 N/A N/A N/A N/A N/A 0.004±0.00 N/A N/A 0.050±0.00 0.024±0.01 0.071±0.03
ENSMUST00000181098 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.102±0.07 N/A N/A

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