C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008K3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs248 VISTA 9606 2:176338429-176938943
GeneTranscriptPositionBiotype
ENSG00000163364 (LINC01116)
long intergenic non-protein coding RNA 1116 		ENST00000295549 (LINC01116-001) 176629589-176637931 lincRNA
ENST00000339037 (LINC01116-002) 176630165-176637562 lincRNA
ENSG00000223777 (AC092162.2)
 ENST00000432828 (AC092162.2-001) 176809426-176809859 processed_pseudogene
ENSG00000224577 (LINC01117)
long intergenic non-protein coding RNA 1117 		ENST00000443670 (LINC01117-001) 176637710-176655958 lincRNA
ENSG00000227098 (AC073636.1)
 ENST00000432925 (AC073636.1-001) 176845993-176849428 lincRNA
ENST00000457756 (AC073636.1-002) 176846056-176849403 lincRNA
ENSG00000229434 (AC017048.1)
 ENST00000412153 (AC017048.1-001) 176506245-176507702 lincRNA
ENSG00000230552 (AC092162.1)
 ENST00000428283 (AC092162.1-004) 176753400-176819250 retained_intron
ENST00000430460 (AC092162.1-002) 176761237-176762616 lincRNA
ENST00000438143 (AC092162.1-001) 176724268-176766111 lincRNA
ENST00000451851 (AC092162.1-003) 176761408-176819310 lincRNA
ENSG00000236231 (AC017048.2)
 ENST00000431455 (AC017048.2-001) 176524879-176531683 lincRNA
ENSG00000237053 (FUCA1P1)
fucosidase, alpha-L- 1, tissue pseudogene 1 		ENST00000374476 (FUCA1P1-001) 176804987-176806337 processed_pseudogene
ENSG00000237260 (AC073069.2)
 ENST00000428657 (AC073069.2-001) 176338637-176339077 processed_pseudogene
ENSG00000265186 (AC068706.2)
 ENST00000579655 (AC068706.2-201) 176382232-176382332 miRNA
ENSG00000272551 (RP11-324L17.1)
 ENST00000608775 (RP11-324L17.1-001) 176611437-176612249 lincRNA
ENSG00000279205 (RP11-632P5.1)
 ENST00000624511 (RP11-632P5.1-001) 176822030-176823653 TEC

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0008K3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs248 VISTA 10090 2:74838220-75438763
GeneTranscriptPositionBiotype
ENSMUSG00000027099 (Mtx2)
metaxin 2 		ENSMUST00000028511 (Mtx2-001) 74825803-74878431 protein_coding
ENSMUST00000129284 (Mtx2-003) 74868981-74876504 retained_intron
ENSMUST00000155844 (Mtx2-002) 74825830-74868814 retained_intron
ENSMUSG00000075276 (Gm13653)
predicted gene 13653 		ENSMUST00000122260 (Gm13653-001) 75192277-75192759 processed_pseudogene
ENSMUSG00000081156 (Gm14425)
predicted gene 14425 		ENSMUST00000121240 (Gm14425-001) 74855706-74856311 transcribed_processed_pseudogene
ENSMUSG00000081406 (Rps6-ps4)
ribosomal protein S6, pseudogene 4 		ENSMUST00000118499 (Rps6-ps4-001) 75191073-75191822 processed_pseudogene
ENSMUSG00000083837 (Gm14427)
predicted gene 14427 		ENSMUST00000117183 (Gm14427-001) 74886372-74887006 processed_pseudogene
ENSMUSG00000086044 (A330043C09Rik)
RIKEN cDNA A330043C09 gene 		ENSMUST00000139823 (A330043C09Rik-001) 75147118-75177658 lincRNA
ENSMUSG00000087333 (Gm13652)
predicted gene 13652 		ENSMUST00000143898 (Gm13652-001) 75124871-75137798 lincRNA
ENSMUSG00000100303 (RP23-180A8.3)
RIKEN cDNA 2600014E21 gene 		ENSMUST00000186411 (RP23-180A8.3-001) 75138842-75322897 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008K3_0001ENSG00000163364ENST00000295549ENST00000339037ENSG00000223777ENST00000432828ENSG00000224577ENST00000443670ENSG00000227098ENST00000432925ENST00000457756ENSG00000229434ENST00000412153ENSG00000230552ENST00000428283ENST00000430460ENST00000438143ENST00000451851ENSG00000236231ENST00000431455ENSG00000237053ENST00000374476ENSG00000237260ENST00000428657ENSG00000265186ENST00000579655ENSG00000272551ENST00000608775ENSG00000279205ENST00000624511CIL_0008K3_0002ENSMUSG00000027099ENSMUST00000028511ENSMUST00000129284ENSMUST00000155844ENSMUSG00000075276ENSMUST00000122260ENSMUSG00000081156ENSMUST00000121240ENSMUSG00000081406ENSMUST00000118499ENSMUSG00000083837ENSMUST00000117183ENSMUSG00000086044ENSMUST00000139823ENSMUSG00000087333ENSMUST00000143898ENSMUSG00000100303ENSMUST00000186411
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008K3_0001ENSG00000163364ENST00000295549ENST00000339037ENSG00000223777ENST00000432828ENSG00000224577ENST00000443670ENSG00000227098ENST00000432925ENST00000457756ENSG00000229434ENST00000412153ENSG00000230552ENST00000428283ENST00000430460ENST00000438143ENST00000451851ENSG00000236231ENST00000431455ENSG00000237053ENST00000374476ENSG00000237260ENST00000428657ENSG00000265186ENST00000579655ENSG00000272551ENST00000608775ENSG00000279205ENST00000624511CIL_0008K3_0002ENSMUSG00000027099ENSMUST00000028511ENSMUST00000129284ENSMUST00000155844ENSMUSG00000075276ENSMUST00000122260ENSMUSG00000081156ENSMUST00000121240ENSMUSG00000081406ENSMUST00000118499ENSMUSG00000083837ENSMUST00000117183ENSMUSG00000086044ENSMUST00000139823ENSMUSG00000087333ENSMUST00000143898ENSMUSG00000100303ENSMUST00000186411
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000163364 ENST00000295549 1.203±0.00 2.907±0.00 0.933±0.00 0.177±0.05 1.156±0.75 1.686±1.29 0.114±0.07 4.379±0.00 0.254±0.21 0.428±0.00 0.131±0.00 3.704±2.87 0.755±0.41 5.235±3.32
ENST00000339037 0.617±0.00 1.472±0.00 N/A 0.047±0.00 0.782±0.00 N/A 0.040±0.00 2.131±0.00 N/A 0.042±0.00 N/A N/A 0.117±0.00 N/A
ENSG00000223777 ENST00000432828 0.179±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224577 ENST00000443670 0.454±0.00 N/A N/A 0.069±0.00 0.425±0.00 N/A N/A N/A N/A N/A 0.124±0.00 N/A 0.267±0.00 0.587±0.00
ENSG00000227098 ENST00000432925 0.039±0.00 0.010±0.00 N/A 0.039±0.00 0.168±0.00 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A 2.394±1.72
ENST00000457756 N/A 0.010±0.00 N/A 0.120±0.08 N/A N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 2.128±0.00
ENSG00000229434 ENST00000412153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.368±0.11
ENSG00000230552 ENST00000428283 0.005±0.00 0.032±0.00 N/A N/A 0.006±0.00 0.033±0.02 0.015±0.01 0.004±0.00 0.052±0.00 N/A N/A 0.005±0.00 N/A 0.074±0.00
ENST00000430460 0.065±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A 0.167±0.00
ENST00000438143 0.023±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000451851 N/A N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00
ENSG00000236231 ENST00000431455 N/A N/A N/A N/A 0.237±0.00 0.268±0.00 0.023±0.00 N/A 0.499±0.00 N/A N/A N/A N/A N/A
ENSG00000237053 ENST00000374476 N/A 0.095±0.00 0.153±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A 0.014±0.01
ENSG00000237260 ENST00000428657 N/A N/A 2.086±0.00 1.078±0.98 N/A N/A 0.086±0.00 0.308±0.00 0.179±0.00 0.831±0.00 N/A 0.220±0.14 0.142±0.00 0.316±0.00
ENSG00000265186 ENST00000579655 N/A 0.268±0.00 N/A N/A 0.567±0.00 N/A N/A 0.558±0.00 N/A N/A N/A 18.868±0.00 N/A 0.246±0.00
ENSG00000272551 ENST00000608775 N/A 0.396±0.00 N/A 0.316±0.18 0.114±0.00 0.103±0.06 N/A 0.345±0.00 N/A N/A 0.171±0.00 0.242±0.22 0.048±0.00 0.566±0.08
ENSG00000279205 ENST00000624511 0.303±0.00 0.275±0.00 N/A 0.014±0.00 0.121±0.02 0.120±0.00 0.012±0.00 0.116±0.00 N/A N/A N/A 0.152±0.12 0.050±0.00 0.281±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027099 ENSMUST00000028511 4.135±1.07 N/A 3.216±0.63 3.281±1.01 2.954±0.64 2.966±0.85 3.790±1.60 3.462±0.48 3.223±1.50 1.359±0.00 3.142±0.63 4.527±1.21 3.751±1.02 2.071±0.77
ENSMUST00000129284 13.781±1.64 N/A 9.546±0.05 13.609±4.47 9.168±1.63 N/A 20.740±1.59 16.748±1.39 12.443±2.53 N/A 4.034±0.63 16.034±4.93 17.159±7.74 9.134±1.64
ENSMUST00000155844 34.800±19.23 217.135±34.10 10.934±0.00 N/A 50.690±14.69 73.859±13.44 29.465±15.54 40.059±12.95 21.428±11.52 36.312±16.89 N/A 70.639±45.96 5.766±0.06 9.755±9.13
ENSMUSG00000075276 ENSMUST00000122260 0.122±0.00 N/A 0.135±0.01 0.165±0.00 N/A N/A N/A N/A 0.396±0.31 0.135±0.00 0.099±0.00 0.197±0.08 0.175±0.05 N/A
ENSMUSG00000081156 ENSMUST00000121240 0.112±0.06 0.194±0.00 0.058±0.04 0.171±0.03 0.329±0.20 0.485±0.09 0.139±0.00 0.165±0.11 0.070±0.04 0.223±0.05 0.078±0.00 0.368±0.40 0.038±0.01 0.183±0.09
ENSMUSG00000081406 ENSMUST00000118499 7.973±2.11 0.639±0.18 13.290±9.87 24.582±14.66 5.200±1.81 2.913±0.88 3.177±0.18 4.293±1.28 35.587±52.67 2.984±1.32 2.619±0.88 6.700±4.05 2.993±2.02 3.061±0.46
ENSMUSG00000083837 ENSMUST00000117183 0.080±0.01 0.304±0.09 0.079±0.06 0.133±0.00 0.634±0.24 N/A 0.119±0.06 0.166±0.09 0.085±0.06 0.165±0.08 N/A 0.395±0.05 0.030±0.00 0.065±0.00
ENSMUSG00000086044 ENSMUST00000139823 N/A 0.083±0.00 0.025±0.01 0.038±0.02 N/A N/A 0.032±0.00 N/A 0.025±0.01 N/A N/A 0.202±0.17 0.011±0.00 0.225±0.11
ENSMUSG00000087333 ENSMUST00000143898 0.196±0.17 0.130±0.04 0.083±0.03 0.036±0.00 0.286±0.09 0.089±0.05 0.034±0.02 0.899±0.78 0.019±0.02 0.019±0.01 0.021±0.00 0.157±0.09 0.014±0.00 0.162±0.18
ENSMUSG00000100303 ENSMUST00000186411 0.379±0.39 0.441±0.12 0.020±0.00 N/A 0.060±0.02 0.044±0.01 0.007±0.00 0.019±0.01 0.007±0.00 0.014±0.01 0.005±0.00 0.126±0.05 0.016±0.01 0.074±0.07

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