C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6, pseudogene 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118499 Rps6-ps4-001 ENSMUSG00000081406 10090 - 2:75191073-75191822 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118499
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118499 7.973±2.11 0.639±0.18 13.290±9.87 24.582±14.66 5.200±1.81 2.913±0.88 3.177±0.18 4.293±1.28 35.587±52.67 2.984±1.32 2.619±0.88 6.700±4.05 2.993±2.02 3.061±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0002 UCNEbase 2:73834549-75665799
CIL_00017S CIL_00017S_0002 CGP 2:74825803-75669407
CIL_0008K3 CIL_0008K3_0002 VISTA 2:74838220-75438763

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315377 RPS6-003 protein_coding Homo_sapiens 0 870
ENST00000366455 AC007618.3-001 processed_pseudogene Homo_sapiens 0 350
ENST00000380384 RPS6-002 protein_coding Homo_sapiens 0 870
ENST00000380394 RPS6-001 protein_coding Homo_sapiens 0 878
ENST00000393214 AC004386.4-001 processed_pseudogene Homo_sapiens 0 544
ENST00000397390 RP11-146N23.1-001 processed_pseudogene Homo_sapiens 0 416
ENST00000463969 RP11-864G5.1-001 processed_pseudogene Homo_sapiens 0 603
ENST00000464444 AD000092.3-001 processed_pseudogene Homo_sapiens 0 688
ENST00000475592 RP11-392P7.1-001 processed_pseudogene Homo_sapiens 0 691
ENST00000479691 RPS6P16-001 processed_pseudogene Homo_sapiens 0 510
ENST00000498815 RPS6-005 processed_transcript Homo_sapiens 0 315

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