C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428657 AC073069.2-001 ENSG00000237260 9606 + 2:176338637-176339077 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverLungOvaryPlacentaTestisENST00000428657
Transcript ID Bladder Brain Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000428657 2.086±0.00 1.078±0.98 0.086±0.00 0.308±0.00 0.179±0.00 0.831±0.00 0.220±0.14 0.142±0.00 0.316±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L2 CIL_0007L2_0001 UCNEbase 2:175103181-177219808
CIL_0008JZ CIL_0008JZ_0001 VISTA 2:175775342-176376682
CIL_00017S CIL_00017S_0001 CGP 2:176269395-177223958
CIL_0008K3 CIL_0008K3_0001 VISTA 2:176338429-176938943

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 433
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 433
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 425
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 0 424
ENSMUST00000119740 Gm12728-001 translated_processed_pseudogene Mus_musculus 0 414
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000172723 Gm5967-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000081336 Gm6065-201 processed_pseudogene Mus_musculus 0 368
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 0 344
ENSMUST00000121819 Gm6044-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 0 265
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 198
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 9e-35 150
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 9e-30 134

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