C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008SL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs270 VISTA 9606 1:38036216-38636958
GeneTranscriptPositionBiotype
ENSG00000185668 (POU3F1)
POU class 3 homeobox 1 		ENST00000373012 (POU3F1-001) 38043827-38046794 protein_coding
ENSG00000223589 (RP5-884C9.3)
 ENST00000424719 (RP5-884C9.3-001) 38080572-38080911 processed_pseudogene
ENSG00000224592 (RP5-884C9.2)
 ENST00000428151 (RP5-884C9.2-001) 38047425-38119025 lincRNA
ENST00000432922 (RP5-884C9.2-002) 38047314-38105734 lincRNA
ENSG00000237290 (LINC01343)
long intergenic non-protein coding RNA 1343 		ENST00000431311 (LINC01343-001) 38209034-38214767 lincRNA
ENSG00000238063 (RP11-329N22.1)
 ENST00000452971 (RP11-329N22.1-001) 38475196-38476484 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0008SL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs270 VISTA 10090 4:124095349-124696097
GeneTranscriptPositionBiotype
ENSMUSG00000028907 (Utp11l)
UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast) 		ENSMUST00000030738 (Utp11l-001) 124678160-124693600 protein_coding
ENSMUST00000153088 (Utp11l-002) 124678797-124693534 processed_transcript
ENSMUSG00000051219 (3100002H09Rik)
RIKEN cDNA 3100002H09 gene 		ENSMUST00000053604 (3100002H09Rik-201) 124609931-124610803 protein_coding
ENSMUSG00000073759 (4933407E24Rik)
RIKEN cDNA 4933407E24 gene 		ENSMUST00000133499 (4933407E24Rik-001) 124569190-124574645 lincRNA
ENSMUSG00000086087 (Gm12916)
predicted gene 12916 		ENSMUST00000139012 (Gm12916-001) 124293693-124299848 lincRNA
ENSMUSG00000086955 (1700021L23Rik)
RIKEN cDNA 1700021L23 gene 		ENSMUST00000153719 (1700021L23Rik-001) 124302837-124311461 lincRNA
ENSMUSG00000086978 (4933435F18Rik)
RIKEN cDNA 4933435F18 gene 		ENSMUST00000125578 (4933435F18Rik-002) 124331406-124332467 lincRNA
ENSMUST00000154878 (4933435F18Rik-001) 124326308-124332508 lincRNA
ENSMUSG00000090125 (Pou3f1)
POU domain, class 3, transcription factor 1 		ENSMUST00000053491 (Pou3f1-001) 124656807-124660655 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SL_0001ENSG00000185668ENST00000373012ENSG00000223589ENST00000424719ENSG00000224592ENST00000428151ENST00000432922ENSG00000237290ENST00000431311ENSG00000238063ENST00000452971CIL_0008SL_0002ENSMUSG00000028907ENSMUST00000030738ENSMUST00000153088ENSMUSG00000051219ENSMUST00000053604ENSMUSG00000073759ENSMUST00000133499ENSMUSG00000086087ENSMUST00000139012ENSMUSG00000086955ENSMUST00000153719ENSMUSG00000086978ENSMUST00000125578ENSMUST00000154878ENSMUSG00000090125ENSMUST00000053491
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008SL_0001ENSG00000185668ENST00000373012ENSG00000223589ENST00000424719ENSG00000224592ENST00000428151ENST00000432922ENSG00000237290ENST00000431311ENSG00000238063ENST00000452971CIL_0008SL_0002ENSMUSG00000028907ENSMUST00000030738ENSMUST00000153088ENSMUSG00000051219ENSMUST00000053604ENSMUSG00000073759ENSMUST00000133499ENSMUSG00000086087ENSMUST00000139012ENSMUSG00000086955ENSMUST00000153719ENSMUSG00000086978ENSMUST00000125578ENSMUST00000154878ENSMUSG00000090125ENSMUST00000053491
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185668 ENST00000373012 0.133±0.00 0.158±0.00 N/A 1.729±1.63 0.028±0.00 0.043±0.00 0.048±0.00 0.109±0.09 0.079±0.00 0.038±0.03 0.120±0.00 0.222±0.10 0.149±0.09 1.569±0.56
ENSG00000223589 ENST00000424719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSG00000224592 ENST00000428151 0.275±0.00 0.293±0.00 N/A 0.485±0.00 0.174±0.00 0.123±0.00 N/A 0.177±0.00 N/A N/A N/A N/A 0.030±0.00 0.168±0.05
ENST00000432922 N/A N/A N/A 0.411±0.00 0.067±0.00 N/A N/A N/A 0.293±0.00 0.054±0.00 N/A 0.094±0.00 0.111±0.02 0.116±0.00
ENSG00000237290 ENST00000431311 N/A N/A N/A 0.100±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.323±0.08
ENSG00000238063 ENST00000452971 N/A 0.245±0.00 N/A N/A N/A N/A N/A N/A N/A 0.410±0.00 N/A N/A N/A 0.890±0.20
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028907 ENSMUST00000030738 2.829±0.64 2.251±0.83 7.433±1.37 4.870±2.65 1.776±0.43 3.506±0.87 1.647±0.24 4.152±0.71 5.538±1.91 3.617±0.59 6.041±1.67 5.324±4.24 12.869±4.08 3.218±0.30
ENSMUST00000153088 0.556±0.09 N/A 1.534±0.01 1.471±0.74 0.427±0.05 0.427±0.00 0.286±0.00 0.815±0.41 1.426±0.58 0.535±0.09 1.317±0.19 2.480±0.47 1.383±0.38 0.419±0.06
ENSMUSG00000051219 ENSMUST00000053604 N/A N/A N/A 0.080±0.03 N/A N/A N/A N/A 0.012±0.00 N/A N/A N/A 0.007±0.00 0.032±0.00
ENSMUSG00000073759 ENSMUST00000133499 0.067±0.00 N/A 0.206±0.08 0.054±0.01 N/A 0.335±0.14 0.080±0.03 0.194±0.08 0.010±0.00 0.127±0.10 0.066±0.00 0.094±0.02 N/A 2.350±1.21
ENSMUSG00000086087 ENSMUST00000139012 0.056±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.02
ENSMUSG00000086955 ENSMUST00000153719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.479±0.00
ENSMUSG00000086978 ENSMUST00000125578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.268±0.42
ENSMUST00000154878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00
ENSMUSG00000090125 ENSMUST00000053491 0.055±0.01 0.077±0.03 0.103±0.00 8.018±2.51 0.230±0.12 0.106±0.06 0.046±0.02 0.023±0.02 0.009±0.01 0.076±0.02 0.165±0.06 0.142±0.07 0.763±0.76 0.064±0.03

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