C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: POU domain, class 3, transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053491 Pou3f1-001 ENSMUSG00000090125 10090 + 4:124656807-124660655 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053491
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053491 0.055±0.01 0.077±0.03 0.103±0.00 8.018±2.51 0.230±0.12 0.106±0.06 0.046±0.02 0.023±0.02 0.009±0.01 0.076±0.02 0.165±0.06 0.142±0.07 0.763±0.76 0.064±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T4 CIL_0008T4_0002 VISTA 4:124059244-124661242
CIL_0008OB CIL_0008OB_0002 VISTA 4:124075081-124676309
CIL_0008SL CIL_0008SL_0002 VISTA 4:124095349-124696097
CIL_0008II CIL_0008II_0002 VISTA 4:124101702-124703017
CIL_0007QK CIL_0007QK_0002 VISTA 4:124155077-124756356
CIL_0008ZP CIL_0008ZP_0002 VISTA 4:124158302-124761497
CIL_0007QI CIL_0007QI_0002 VISTA 4:124177456-124779254
CIL_000892 CIL_000892_0002 VISTA 4:124220131-124821365
CIL_0008EP CIL_0008EP_0002 VISTA 4:124226300-124827138
CIL_0008NZ CIL_0008NZ_0002 VISTA 4:124251046-124852185
CIL_0007UI CIL_0007UI_0002 VISTA 4:124315408-124916812
CIL_00095Y CIL_00095Y_0002 VISTA 4:124371949-124972943
CIL_0003Q5 CIL_0003Q5_0002 CGP 4:124656807-124693600

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0003677 IDA DNA binding
GO:0003705 ISO RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006366 ISO transcription from RNA polymerase II promoter
GO:0008544 IGI epidermis development
GO:0010628 IDA positive regulation of gene expression
GO:0014044 IMP Schwann cell development
GO:0022011 IGI myelination in peripheral nervous system
GO:0030216 IGI keratinocyte differentiation
GO:0030900 IMP forebrain development
GO:0042552 IMP myelination
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000110243 pou3f2a-201 protein_coding Danio_rerio 0 505
ENSDART00000013148 pou3f1-001 protein_coding Danio_rerio 0 315
ENSDART00000044803 pou2f3-201 protein_coding Danio_rerio 0.000000000000007 88
ENST00000260264 POU2F3-006 protein_coding Homo_sapiens 8e-33 147
ENST00000328345 POU3F2-001 protein_coding Homo_sapiens 0 438
ENST00000361360 POU3F3-001 protein_coding Homo_sapiens 0 604
ENST00000373012 POU3F1-001 protein_coding Homo_sapiens 0 3635
ENST00000373200 POU3F4-001 protein_coding Homo_sapiens 0 425
ENST00000532638 POU2F3-003 retained_intron Homo_sapiens 4e-19 100
ENST00000532663 POU2F3-005 protein_coding Homo_sapiens 1e-19 100
ENST00000533620 POU2F3-002 nonsense_mediated_decay Homo_sapiens 4e-33 147
ENST00000543440 POU2F3-001 protein_coding Homo_sapiens 6e-33 147

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