C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008UD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1687 VISTA 9606 15:47420599-48024055
GeneTranscriptPositionBiotype
ENSG00000137872 (SEMA6D)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 		ENST00000316364 (SEMA6D-004) 47718489-47774223 protein_coding
ENST00000354744 (SEMA6D-005) 47718489-47774223 protein_coding
ENST00000355997 (SEMA6D-201) 47718489-47774222 protein_coding
ENST00000358066 (SEMA6D-006) 47718489-47774223 protein_coding
ENST00000389425 (SEMA6D-003) 47718461-47765480 protein_coding
ENST00000389428 (SEMA6D-007) 47718489-47774223 protein_coding
ENST00000536845 (SEMA6D-002) 47717363-47771933 protein_coding
ENST00000537942 (SEMA6D-202) 47412390-47774220 protein_coding
ENST00000558014 (SEMA6D-001) 47184101-47774221 protein_coding
ENST00000558431 (SEMA6D-014) 47765822-47767303 retained_intron
ENST00000558816 (SEMA6D-008) 47717457-47772882 protein_coding
ENST00000559064 (SEMA6D-015) 47766577-47767515 protein_coding
ENST00000559184 (SEMA6D-009) 47185663-47759864 protein_coding
ENST00000559196 (SEMA6D-013) 47759723-47762319 protein_coding
ENST00000560006 (SEMA6D-016) 47766580-47770765 protein_coding
ENST00000560636 (SEMA6D-010) 47339067-47759802 protein_coding
ENST00000561106 (SEMA6D-011) 47717402-47759983 retained_intron
ENST00000561133 (SEMA6D-012) 47716998-47761428 protein_coding
ENSG00000213862 (CTD-2270N23.1)
 ENST00000497325 (CTD-2270N23.1-001) 47730144-47730935 processed_pseudogene
ENSG00000221202 (AC012050.1)
 ENST00000408275 (AC012050.1-201) 47552475-47552571 miRNA
ENSG00000259572 (LINC01491)
long intergenic non-protein coding RNA 1491 		ENST00000558434 (LINC01491-003) 47819628-47844956 lincRNA
ENST00000558792 (LINC01491-001) 47803384-47846236 lincRNA
ENST00000561238 (LINC01491-002) 47814002-47846215 lincRNA
ENSG00000259588 (RP11-552E10.1)
 ENST00000558185 (RP11-552E10.1-001) 47603880-47606352 antisense
ENSG00000259730 (CTD-2007H18.1)
 ENST00000558370 (CTD-2007H18.1-001) 47944044-47949509 lincRNA
ENSG00000259740 (RP11-142J21.2)
 ENST00000558258 (RP11-142J21.2-001) 47525169-47527756 sense_intronic
ENSG00000259754 (RP11-208K4.1)
 ENST00000560900 (RP11-208K4.1-001) 47884310-48049112 lincRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0008UD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1687 VISTA 10090 2:124312597-124915764
GeneTranscriptPositionBiotype
ENSMUSG00000087450 (Gm13994)
predicted gene 13994 		ENSMUST00000137397 (Gm13994-001) 124708655-124711083 lincRNA

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008UD_0001ENSG00000137872ENST00000316364ENST00000354744ENST00000355997ENST00000358066ENST00000389425ENST00000389428ENST00000536845ENST00000537942ENST00000558014ENST00000558431ENST00000558816ENST00000559064ENST00000559184ENST00000559196ENST00000560006ENST00000560636ENST00000561106ENST00000561133ENSG00000213862ENST00000497325ENSG00000221202ENST00000408275ENSG00000259572ENST00000558434ENST00000558792ENST00000561238ENSG00000259588ENST00000558185ENSG00000259730ENST00000558370ENSG00000259740ENST00000558258ENSG00000259754ENST00000560900CIL_0008UD_0002ENSMUSG00000087450ENSMUST00000137397
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008UD_0001ENSG00000137872ENST00000316364ENST00000354744ENST00000358066ENST00000389425ENST00000389428ENST00000536845ENST00000537942ENST00000558014ENST00000558816ENST00000559064ENSG00000213862ENST00000497325ENSG00000221202ENST00000408275ENSG00000259572ENST00000558434ENST00000558792ENST00000561238ENSG00000259588ENST00000558185ENSG00000259730ENST00000558370ENSG00000259740ENST00000558258ENSG00000259754ENST00000560900CIL_0008UD_0002ENSMUSG00000087450ENSMUST00000137397
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137872 ENST00000316364 0.160±0.00 N/A N/A N/A 0.239±0.00 N/A 0.164±0.00 0.212±0.00 N/A N/A 0.315±0.00 2.260±1.67 1.607±0.89 0.180±0.00
ENST00000354744 0.769±0.00 N/A N/A 3.335±0.00 N/A 0.266±0.00 0.501±0.00 0.904±0.00 N/A 0.308±0.00 N/A N/A 1.607±0.00 0.540±0.00
ENST00000355997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000358066 N/A N/A N/A N/A N/A 0.176±0.00 N/A N/A N/A 1.119±0.00 N/A N/A N/A N/A
ENST00000389425 N/A N/A 2.006±0.00 N/A N/A N/A 0.531±0.00 N/A N/A 1.353±0.00 N/A N/A N/A N/A
ENST00000389428 N/A N/A 0.899±0.00 1.422±0.00 0.713±0.00 0.826±0.00 N/A 0.984±0.00 N/A N/A N/A N/A N/A N/A
ENST00000536845 N/A N/A 1.319±0.00 4.793±0.00 0.619±0.00 1.271±0.00 0.829±0.00 N/A 0.670±0.00 1.101±0.69 0.812±0.00 0.966±0.00 N/A N/A
ENST00000537942 N/A N/A N/A 0.870±0.00 N/A 0.212±0.00 N/A N/A 0.232±0.00 N/A N/A 1.787±0.00 1.066±0.00 N/A
ENST00000558014 N/A 0.300±0.00 N/A 0.875±0.00 0.299±0.00 0.168±0.00 N/A N/A 0.244±0.00 N/A N/A N/A N/A 0.271±0.00
ENST00000558431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558816 N/A N/A N/A N/A 0.717±0.00 2.130±0.00 N/A 0.932±0.00 N/A 0.445±0.00 N/A N/A N/A N/A
ENST00000559064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.777±0.00 N/A N/A N/A
ENST00000559184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213862 ENST00000497325 0.302±0.00 0.164±0.00 0.061±0.00 0.134±0.00 0.089±0.00 0.089±0.01 0.026±0.00 0.116±0.00 0.154±0.00 0.173±0.00 0.170±0.00 0.235±0.07 0.105±0.05 0.171±0.05
ENSG00000221202 ENST00000408275 N/A N/A N/A 0.186±0.00 N/A 0.170±0.00 N/A 0.717±0.00 0.365±0.00 N/A N/A N/A N/A N/A
ENSG00000259572 ENST00000558434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00
ENST00000558792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.608±0.00
ENST00000561238 N/A N/A N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A N/A N/A 1.256±0.44
ENSG00000259588 ENST00000558185 N/A N/A N/A 0.280±0.00 N/A N/A N/A N/A 0.169±0.00 N/A N/A N/A 0.136±0.00 0.062±0.00
ENSG00000259730 ENST00000558370 N/A N/A N/A N/A N/A N/A N/A 0.229±0.00 N/A N/A N/A N/A N/A 0.193±0.14
ENSG00000259740 ENST00000558258 N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.127±0.00 0.073±0.00 0.089±0.00
ENSG00000259754 ENST00000560900 N/A N/A 0.104±0.00 N/A N/A N/A N/A 0.387±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000087450 ENSMUST00000137397 N/A N/A N/A 0.046±0.00 0.537±0.20 N/A N/A 0.178±0.05 0.802±0.37 N/A 0.098±0.00 0.099±0.00 0.056±0.03 0.486±0.28

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