C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316364 SEMA6D-004 ENSG00000137872 9606 + 15:47718489-47774223 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyMuscleOvaryPlacentaTestisENST00000316364
Transcript ID Adipose Breast Heart Kidney Muscle Ovary Placenta Testis
ENST00000316364 0.160±0.00 0.239±0.00 0.164±0.00 0.212±0.00 0.315±0.00 2.260±1.67 1.607±0.89 0.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NB CIL_0004NB_0001 CGP 15:47184101-48142672

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007411 TAS axon guidance
GO:0014911 IEA positive regulation of smooth muscle cell migration
GO:0014912 IEA negative regulation of smooth muscle cell migration
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0021591 IEA ventricular system development
GO:0030215 IEA semaphorin receptor binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103239 Sema6d-008 protein_coding Mus_musculus 0 4665
ENSMUST00000103240 Sema6d-004 protein_coding Mus_musculus 0 4599
ENSMUST00000077847 Sema6d-202 protein_coding Mus_musculus 0 2409
ENSMUST00000078621 Sema6d-203 protein_coding Mus_musculus 0 2170
ENSMUST00000076335 Sema6d-201 protein_coding Mus_musculus 0 2170
ENSMUST00000051419 Sema6d-006 protein_coding Mus_musculus 0 2170
ENSMUST00000103241 Sema6d-001 protein_coding Mus_musculus 0 2170
ENSMUST00000132088 Sema6d-005 retained_intron Mus_musculus 0 2097
ENSMUST00000103238 Sema6d-007 protein_coding Mus_musculus 0 2069

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