C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00090R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs727 VISTA 9606 10:58731418-59332389
GeneTranscriptPositionBiotype
ENSG00000122870 (BICC1)
BicC family RNA binding protein 1 		ENST00000263103 (BICC1-001) 58793535-58814314 protein_coding
ENST00000373886 (BICC1-002) 58513140-58831437 protein_coding
ENST00000476684 (BICC1-003) 58620849-58650867 processed_transcript
ENSG00000165443 (PHYHIPL)
phytanoyl-CoA 2-hydroxylase interacting protein-like 		ENST00000373878 (PHYHIPL-002) 59177258-59247774 protein_coding
ENST00000373880 (PHYHIPL-001) 59176590-59247774 protein_coding
ENST00000472199 (PHYHIPL-004) 59236527-59238768 processed_transcript
ENST00000486074 (PHYHIPL-003) 59176661-59246147 nonsense_mediated_decay
ENSG00000226557 (TRAF6P1)
TNF receptor-associated factor 6 pseudogene 1 		ENST00000429404 (TRAF6P1-001) 59136625-59138182 processed_pseudogene
ENSG00000236556 (RP11-443O13.3)
 ENST00000433249 (RP11-443O13.3-001) 59282147-59282835 antisense
ENSG00000237949 (LINC00844)
long intergenic non-protein coding RNA 844 		ENST00000432535 (LINC00844-001) 58999626-59001543 lincRNA
ENSG00000252076 (RN7SKP196)
RNA, 7SK small nuclear pseudogene 196 		ENST00000516267 (RN7SKP196-201) 58869184-58869528 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_00090R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs727 VISTA 10090 10:70433384-71034387
GeneTranscriptPositionBiotype
ENSMUSG00000014329 (Bicc1)
bicaudal C homolog 1 (Drosophila) 		ENSMUST00000014473 (Bicc1-003) 70925102-71159690 protein_coding
ENSMUST00000131445 (Bicc1-002) 70925102-71146860 protein_coding
ENSMUST00000143791 (Bicc1-001) 70922832-71159700 protein_coding
ENSMUST00000144740 (Bicc1-004) 70934502-70948489 retained_intron
ENSMUSG00000037747 (Phyhipl)
phytanoyl-CoA hydroxylase interacting protein-like 		ENSMUST00000046513 (Phyhipl-001) 70557682-70599291 protein_coding
ENSMUST00000159025 (Phyhipl-010) 70607088-70607562 processed_transcript
ENSMUST00000160127 (Phyhipl-009) 70607598-70626392 processed_transcript
ENSMUST00000161687 (Phyhipl-005) 70601133-70655963 processed_transcript
ENSMUST00000162144 (Phyhipl-008) 70559703-70655958 protein_coding
ENSMUST00000162251 (Phyhipl-004) 70558877-70592820 protein_coding
ENSMUST00000162470 (Phyhipl-003) 70563865-70599082 retained_intron
ENSMUST00000162571 (Phyhipl-006) 70601049-70651925 processed_transcript
ENSMUST00000162793 (Phyhipl-007) 70570909-70655965 protein_coding
ENSMUST00000163054 (Phyhipl-002) 70567821-70599290 retained_intron
ENSMUSG00000043259 (Fam13c)
family with sequence similarity 13, member C 		ENSMUST00000062883 (Fam13c-002) 70440926-70558731 protein_coding
ENSMUST00000105436 (Fam13c-201) 70440668-70558729 protein_coding
ENSMUST00000173042 (Fam13c-001) 70440880-70558729 protein_coding
ENSMUSG00000047692 (4930533K18Rik)
RIKEN cDNA 4930533K18 gene 		ENSMUST00000058942 (4930533K18Rik-201) 70868669-70934324 protein_coding
ENSMUSG00000087774 (Gm22320)
predicted gene, 22320 		ENSMUST00000157149 (Gm22320-201) 70501192-70501503 misc_RNA
ENSMUSG00000094703 (Gm24486)
predicted gene, 24486 		ENSMUST00000178420 (Gm24486-201) 70882104-70882210 snRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00090R_0001ENSG00000122870ENST00000263103ENST00000373886ENST00000476684ENSG00000165443ENST00000373878ENST00000373880ENST00000472199ENST00000486074ENSG00000226557ENST00000429404ENSG00000236556ENST00000433249ENSG00000237949ENST00000432535ENSG00000252076ENST00000516267CIL_00090R_0002ENSMUSG00000014329ENSMUST00000014473ENSMUST00000131445ENSMUST00000143791ENSMUST00000144740ENSMUSG00000037747ENSMUST00000046513ENSMUST00000159025ENSMUST00000160127ENSMUST00000161687ENSMUST00000162144ENSMUST00000162251ENSMUST00000162470ENSMUST00000162571ENSMUST00000162793ENSMUST00000163054ENSMUSG00000043259ENSMUST00000062883ENSMUST00000105436ENSMUST00000173042ENSMUSG00000047692ENSMUST00000058942ENSMUSG00000087774ENSMUST00000157149ENSMUSG00000094703ENSMUST00000178420
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00090R_0001ENSG00000122870ENST00000263103ENST00000373886ENSG00000165443ENST00000373878ENST00000373880ENST00000486074ENSG00000226557ENST00000429404ENSG00000236556ENST00000433249ENSG00000237949ENST00000432535ENSG00000252076ENST00000516267CIL_00090R_0002ENSMUSG00000014329ENSMUST00000014473ENSMUST00000131445ENSMUST00000143791ENSMUSG00000037747ENSMUST00000046513ENSMUST00000161687ENSMUST00000162144ENSMUST00000162251ENSMUSG00000043259ENSMUST00000062883ENSMUST00000105436ENSMUST00000173042ENSMUSG00000047692ENSMUST00000058942ENSMUSG00000087774ENSMUST00000157149ENSMUSG00000094703ENSMUST00000178420
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000122870 ENST00000263103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.296±0.00 N/A N/A N/A
ENST00000373886 4.442±0.00 4.315±0.00 5.413±0.00 0.382±0.28 1.942±0.64 2.068±0.71 1.629±0.49 16.556±0.00 0.541±0.00 3.066±0.66 0.469±0.00 4.753±3.68 0.755±0.41 3.464±2.35
ENST00000476684 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165443 ENST00000373878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A
ENST00000373880 N/A N/A 0.988±0.00 5.673±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.253±0.00 9.931±0.00
ENST00000472199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486074 N/A N/A 1.634±0.00 42.275±26.33 N/A 1.646±0.00 N/A 5.214±4.48 0.661±0.00 N/A N/A N/A 2.536±1.77 21.610±1.48
ENSG00000226557 ENST00000429404 N/A N/A 0.202±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.022±0.01
ENSG00000236556 ENST00000433249 N/A 0.074±0.00 0.383±0.00 0.264±0.00 0.356±0.25 0.523±0.00 0.591±0.49 N/A 1.385±0.00 0.437±0.00 0.306±0.00 2.448±0.00 N/A N/A
ENSG00000237949 ENST00000432535 0.126±0.00 1.073±0.00 N/A 34.646±18.82 0.483±0.00 1.549±0.00 8.141±0.00 12.265±9.82 1.573±1.15 0.920±0.00 0.438±0.00 0.881±0.12 0.210±0.11 5.985±5.18
ENSG00000252076 ENST00000516267 N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014329 ENSMUST00000014473 6.775±3.75 2.905±1.25 3.859±0.85 0.640±0.18 3.477±1.99 1.589±0.24 2.806±0.74 9.966±3.49 0.495±0.18 5.853±2.57 N/A 8.185±4.10 1.136±0.21 0.235±0.00
ENSMUST00000131445 1.337±0.00 N/A 7.709±0.00 N/A 3.291±0.59 2.753±0.86 2.139±0.22 8.887±5.68 0.485±0.36 3.966±0.00 N/A 6.981±0.00 0.803±0.18 0.570±0.06
ENSMUST00000143791 3.910±1.86 1.815±0.45 9.445±4.47 0.668±0.17 2.937±1.17 2.788±0.71 2.670±0.88 12.891±4.48 0.826±0.58 4.604±1.58 0.609±0.25 6.209±3.01 1.745±1.45 0.755±0.44
ENSMUST00000144740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037747 ENSMUST00000046513 0.776±0.36 1.194±0.04 N/A 16.502±2.45 N/A 0.157±0.00 N/A 5.165±1.34 0.058±0.05 N/A 0.522±0.00 0.363±0.12 1.116±0.93 18.353±2.83
ENSMUST00000159025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161687 N/A N/A N/A N/A N/A N/A N/A 6.311±0.51 N/A N/A N/A N/A N/A N/A
ENSMUST00000162144 N/A N/A N/A 125.342±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 21.002±12.99 164.391±0.00
ENSMUST00000162251 N/A N/A N/A 31.341±8.40 N/A 0.287±0.00 N/A 7.881±1.25 0.030±0.00 N/A N/A 0.343±0.00 6.144±4.73 134.993±51.79
ENSMUST00000162470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000043259 ENSMUST00000062883 N/A N/A N/A N/A 0.280±0.00 N/A N/A N/A 0.036±0.01 0.719±0.00 0.629±0.29 1.581±0.65 N/A N/A
ENSMUST00000105436 0.613±0.22 1.478±0.87 2.346±1.02 7.024±2.35 0.523±0.36 0.501±0.12 0.481±0.30 N/A 0.027±0.01 0.829±0.13 0.675±0.30 0.595±0.31 0.359±0.00 N/A
ENSMUST00000173042 N/A N/A N/A N/A N/A N/A 0.165±0.01 N/A 0.056±0.04 N/A 0.618±0.00 0.783±0.07 0.137±0.00 N/A
ENSMUSG00000047692 ENSMUST00000058942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.610±0.60
ENSMUSG00000087774 ENSMUST00000157149 N/A N/A 0.277±0.22 0.529±0.00 0.373±0.11 N/A N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A
ENSMUSG00000094703 ENSMUST00000178420 N/A N/A 6.072±0.00 55.065±0.00 N/A N/A N/A N/A 7.241±0.00 N/A N/A N/A N/A N/A

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