C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0009C1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1677 VISTA 9606 7:25193988-25797261
GeneTranscriptPositionBiotype
ENSG00000105954 (NPVF)
neuropeptide VF precursor 		ENST00000222674 (NPVF-001) 25224570-25228486 protein_coding
ENSG00000213798 (AC004129.9)
 ENST00000417617 (AC004129.9-001) 25212170-25212965 processed_pseudogene
ENSG00000223561 (AC003090.1)
 ENST00000423689 (AC003090.1-002) 25657071-25662941 lincRNA
ENST00000446840 (AC003090.1-001) 25593351-25663053 lincRNA
ENST00000456777 (AC003090.1-005) 25594533-25750994 lincRNA
ENSG00000233824 (AC003985.1)
 ENST00000414127 (AC003985.1-001) 25321302-25326815 lincRNA
ENSG00000239622 (CTA-242H14.1)
 ENST00000466070 (CTA-242H14.1-001) 25689580-25689959 processed_pseudogene
ENSG00000260951 (RP5-978I12.1)
 ENST00000562268 (RP5-978I12.1-001) 25358240-25359908 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
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Structures from Ensembl
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Structures from Ensembl
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CIL_0009C1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1677 VISTA 10090 6:50589578-51192588
GeneTranscriptPositionBiotype
ENSMUSG00000029828 (4921507P07Rik)
RIKEN cDNA 4921507P07 gene 		ENSMUST00000031852 (4921507P07Rik-001) 50573302-50596632 protein_coding
ENSMUSG00000029831 (Npvf)
neuropeptide VF precursor 		ENSMUST00000031853 (Npvf-001) 50650672-50654439 protein_coding
ENSMUSG00000073072 (G930045G22Rik)
RIKEN cDNA G930045G22 gene 		ENSMUST00000101402 (G930045G22Rik-201) 50846713-50847770 protein_coding
ENSMUST00000161723 (G930045G22Rik-001) 50846524-50878079 protein_coding
ENSMUSG00000085776 (5430402O13Rik)
RIKEN cDNA 5430402O13 gene 		ENSMUST00000126537 (5430402O13Rik-002) 50566738-50594822 antisense
ENSMUST00000147260 (5430402O13Rik-001) 50566643-50594865 antisense
ENSMUSG00000091981 (Gm8038)
predicted gene 8038 		ENSMUST00000168705 (Gm8038-201) 50619822-50621885 processed_pseudogene
ENSMUSG00000092012 (Gm4782)
predicted gene 4782 		ENSMUST00000164674 (Gm4782-201) 50608637-50610709 protein_coding
ENSMUSG00000099538 (RP23-460N4.1)
predicted gene 29004 		ENSMUST00000187879 (RP23-460N4.1-001) 51003175-51004253 lincRNA

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009C1_0001ENSG00000105954ENST00000222674ENSG00000213798ENST00000417617ENSG00000223561ENST00000423689ENST00000446840ENST00000456777ENSG00000233824ENST00000414127ENSG00000239622ENST00000466070ENSG00000260951ENST00000562268CIL_0009C1_0002ENSMUSG00000029828ENSMUST00000031852ENSMUSG00000029831ENSMUST00000031853ENSMUSG00000073072ENSMUST00000101402ENSMUST00000161723ENSMUSG00000085776ENSMUST00000126537ENSMUST00000147260ENSMUSG00000091981ENSMUST00000168705ENSMUSG00000092012ENSMUST00000164674ENSMUSG00000099538ENSMUST00000187879
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0009C1_0001ENSG00000105954ENST00000222674ENSG00000213798ENST00000417617ENSG00000223561ENST00000423689ENST00000446840ENST00000456777ENSG00000233824ENST00000414127ENSG00000239622ENST00000466070ENSG00000260951ENST00000562268CIL_0009C1_0002ENSMUSG00000029828ENSMUST00000031852ENSMUSG00000029831ENSMUST00000031853ENSMUSG00000073072ENSMUST00000101402ENSMUST00000161723ENSMUSG00000085776ENSMUST00000126537ENSMUST00000147260ENSMUSG00000091981ENSMUST00000168705ENSMUSG00000092012ENSMUST00000164674ENSMUSG00000099538ENSMUST00000187879
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105954 ENST00000222674 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000213798 ENST00000417617 0.065±0.00 0.093±0.00 N/A 0.026±0.00 0.074±0.00 0.045±0.00 0.022±0.00 N/A N/A N/A 0.020±0.00 0.344±0.00 N/A 0.042±0.00
ENSG00000223561 ENST00000423689 N/A N/A N/A 0.096±0.00 0.171±0.00 0.279±0.00 0.071±0.00 N/A 0.052±0.00 N/A N/A N/A N/A N/A
ENST00000446840 0.019±0.00 N/A N/A 0.045±0.00 0.573±0.00 0.306±0.00 0.161±0.10 1.054±0.00 0.145±0.12 N/A N/A 0.113±0.06 0.046±0.02 1.420±0.32
ENST00000456777 N/A N/A N/A 0.054±0.00 N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A N/A
ENSG00000233824 ENST00000414127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.199±0.00
ENSG00000239622 ENST00000466070 N/A N/A N/A 0.128±0.00 0.924±0.00 N/A N/A N/A N/A 0.114±0.00 N/A N/A N/A 0.052±0.00
ENSG00000260951 ENST00000562268 N/A 0.054±0.00 N/A 0.041±0.03 N/A 0.146±0.00 N/A N/A N/A 0.035±0.00 N/A 0.085±0.08 N/A 0.262±0.13
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029828 ENSMUST00000031852 0.302±0.19 0.061±0.02 1.185±0.48 1.001±0.10 0.230±0.20 0.131±0.06 0.117±0.01 0.187±0.06 0.254±0.25 0.227±0.08 0.237±0.08 0.202±0.09 0.337±0.08 110.151±29.72
ENSMUSG00000029831 ENSMUST00000031853 N/A N/A N/A 0.130±0.05 N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 0.014±0.00 0.051±0.00
ENSMUSG00000073072 ENSMUST00000101402 N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161723 N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.003±0.00 N/A
ENSMUSG00000085776 ENSMUST00000126537 N/A N/A N/A 0.232±0.00 0.567±0.00 0.088±0.00 N/A 0.078±0.00 0.211±0.16 0.278±0.14 0.280±0.00 0.255±0.11 0.295±0.23 1.105±0.00
ENSMUST00000147260 0.464±0.26 0.892±0.38 0.526±0.00 0.875±0.21 1.060±0.37 0.407±0.14 0.230±0.08 0.366±0.09 0.663±0.66 0.170±0.06 0.131±0.04 1.483±0.78 0.222±0.20 1.944±0.96
ENSMUSG00000091981 ENSMUST00000168705 N/A N/A 0.015±0.00 0.012±0.00 N/A N/A N/A N/A 0.008±0.00 0.025±0.00 N/A 0.043±0.00 0.002±0.00 N/A
ENSMUSG00000092012 ENSMUST00000164674 N/A N/A 0.008±0.00 0.038±0.03 N/A N/A N/A N/A 0.004±0.00 N/A N/A 0.049±0.00 0.002±0.00 N/A
ENSMUSG00000099538 ENSMUST00000187879 N/A N/A N/A 0.008±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.192±0.00

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