C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417617 AC004129.9-001 ENSG00000213798 9606 - 7:25212170-25212965 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartMuscleOvaryTestisENST00000417617
Transcript ID Adipose Adrenal Brain Breast Colon Heart Muscle Ovary Testis
ENST00000417617 0.065±0.00 0.093±0.00 0.026±0.00 0.074±0.00 0.045±0.00 0.022±0.00 0.020±0.00 0.344±0.00 0.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099B CIL_00099B_0001 VISTA 7:25093990-25695067
CIL_00094X CIL_00094X_0001 VISTA 7:25107732-25710366
CIL_0009C1 CIL_0009C1_0001 VISTA 7:25193988-25797261

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 665
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 656
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 649
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 616
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 595
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000121278 Gm13726-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 540
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 503
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000117439 Gm12385-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 455
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000188004 RP23-78M21.1-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000117903 Gm8097-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 322
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.0000000000008 79
ENSMUST00000119680 Gm15702-001 processed_pseudogene Mus_musculus 0.000000007 66

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