C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000004277 lamc1-001 ENSDARG00000036279 7955 + 2:35601433-35700011 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000004277
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000004277 2.378±1.44 4.944±4.17 1.507±0.25 0.470±0.00 14.462±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W9 CIL_0001W9_0001 CGP 2:35601433-35742453

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0007155 IEA cell adhesion
GO:0007517 IMP muscle organ development
GO:0007519 IMP skeletal muscle tissue development
GO:0007634 IMP optokinetic behavior
GO:0031290 IMP retinal ganglion cell axon guidance
GO:0048570 IMP notochord morphogenesis
GO:0050908 IMP detection of light stimulus involved in visual perception

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027752 Lamc1-001 protein_coding Mus_musculus 0 1035
ENST00000258341 LAMC1-001 protein_coding Homo_sapiens 0 1125
ENST00000479499 LAMC1-004 processed_transcript Homo_sapiens 0 198

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