C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, gamma 1 (formerly LAMB2)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000258341 LAMC1-001 ENSG00000135862 9606 + 1:183023460-183145592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000258341
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000258341 126.088±0.00 33.902±0.00 7.078±0.00 1.828±1.34 58.823±0.00 55.437±40.24 18.670±10.23 8.597±6.92 22.753±17.68 23.065±10.90 19.053±8.39 24.053±9.75 106.182±28.28 21.692±14.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001W9 CIL_0001W9_0002 CGP 1:183023460-183244900

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005201 IMP extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005605 IEA basal lamina
GO:0005606 NAS laminin-1 complex
GO:0005615 NAS extracellular space
GO:0006461 IDA protein complex assembly
GO:0007155 IDA cell adhesion
GO:0007411 TAS axon guidance
GO:0007492 TAS endoderm development
GO:0016477 IMP cell migration
GO:0022617 IMP extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0031012 IDA extracellular matrix
GO:0031175 IEA neuron projection development
GO:0031581 IMP hemidesmosome assembly
GO:0034446 IDA substrate adhesion-dependent cell spreading
GO:0043208 IEA glycosphingolipid binding
GO:0043259 TAS laminin-10 complex
GO:0043260 TAS laminin-11 complex
GO:0050679 TAS positive regulation of epithelial cell proliferation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027752 Lamc1-001 protein_coding Mus_musculus 0 6211
ENSDART00000004277 lamc1-001 protein_coding Danio_rerio 0 1125
ENSMUST00000159251 Lamc1-002 retained_intron Mus_musculus 0 603
ENSMUST00000161744 Lamc1-005 protein_coding Mus_musculus 0 342

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