C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000010813 foxa3-001 ENSDARG00000012788 7955 - 18:44759027-44762722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000010813
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000010813 0.059±0.02 0.215±0.09 6.053±2.41 5.588±0.00 0.185±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00044B CIL_00044B_0001 CGP 18:44759027-44777969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003690 IBA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IBA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IBA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007420 IGI brain development
GO:0008134 IEA transcription factor binding
GO:0008301 IBA DNA binding, bending
GO:0010817 IBA regulation of hormone levels
GO:0019904 IEA protein domain specific binding
GO:0021999 IGI neural plate anterior/posterior regionalization
GO:0033504 IMP floor plate development
GO:0042593 IBA glucose homeostasis
GO:0043565 IEA sequence-specific DNA binding
GO:0045666 IBA positive regulation of neuron differentiation
GO:0045944 IBA positive regulation of transcription from RNA polymerase II promoter
GO:0048319 IGI axial mesoderm morphogenesis
GO:0048665 IBA neuron fate specification
GO:0048785 IMP hatching gland development
GO:0051090 IBA regulation of sequence-specific DNA binding transcription factor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044380 Foxa1-201 protein_coding Mus_musculus 0 326
ENSMUST00000047315 Foxa2-001 protein_coding Mus_musculus 0 292
ENSMUST00000109964 Foxa2-002 protein_coding Mus_musculus 0 292
ENSMUST00000146242 Foxa2-003 processed_transcript Mus_musculus 1.4013e-45 187
ENSMUST00000172928 Foxa2-004 protein_coding Mus_musculus 0 198
ENST00000250448 FOXA1-001 protein_coding Homo_sapiens 0 326
ENST00000377115 FOXA2-001 protein_coding Homo_sapiens 0 281
ENST00000419308 FOXA2-002 protein_coding Homo_sapiens 0 281
ENST00000545425 FOXA1-002 processed_transcript Homo_sapiens 0 326

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