C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047315 Foxa2-001 ENSMUSG00000037025 10090 - 2:148042877-148046969 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungOvaryPlacentaENSMUST00000047315
Transcript ID Liver Lung Ovary Placenta
ENSMUST00000047315 5.296±3.48 5.452±0.00 0.703±0.33 1.351±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XI CIL_0002XI_0002 CGP 2:147361925-148046969
CIL_0001U5 CIL_0001U5_0002 CGP 2:148042877-148396767

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000432 IDA positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0000433 IDA negative regulation of transcription from RNA polymerase II promoter by glucose
GO:0001205 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001701 IMP in utero embryonic development
GO:0001705 IGI ectoderm formation
GO:0001708 IDA cell fate specification
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007389 IGI pattern specification process
GO:0008134 IEA transcription factor binding
GO:0008344 IMP adult locomotory behavior
GO:0009653 IGI anatomical structure morphogenesis
GO:0009952 IGI anterior/posterior pattern specification
GO:0009953 IGI dorsal/ventral pattern formation
GO:0010468 IGI regulation of gene expression
GO:0016568 IEA chromatin modification
GO:0019216 IDA regulation of lipid metabolic process
GO:0019218 IDA regulation of steroid metabolic process
GO:0019904 IEA protein domain specific binding
GO:0021533 IGI cell differentiation in hindbrain
GO:0021904 IDA dorsal/ventral neural tube patterning
GO:0023019 IDA signal transduction involved in regulation of gene expression
GO:0030324 IGI lung development
GO:0031018 IMP endocrine pancreas development
GO:0032525 IMP somite rostral/caudal axis specification
GO:0033132 IDA negative regulation of glucokinase activity
GO:0040019 IMP positive regulation of embryonic development
GO:0043565 IDA sequence-specific DNA binding
GO:0045665 IGI negative regulation of neuron differentiation
GO:0045666 IGI positive regulation of neuron differentiation
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0045945 IMP positive regulation of transcription from RNA polymerase III promoter
GO:0048468 IMP cell development
GO:0048646 IGI anatomical structure formation involved in morphogenesis
GO:0048665 IGI neuron fate specification
GO:0060441 IGI epithelial tube branching involved in lung morphogenesis
GO:0060487 IGI lung epithelial cell differentiation
GO:0061178 IDA regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0061448 IGI connective tissue development
GO:0070741 TAS response to interleukin-6
GO:0071542 IMP dopaminergic neuron differentiation
GO:0090009 IMP primitive streak formation
GO:2000543 IMP positive regulation of gastrulation
GO:2000971 IDA negative regulation of detection of glucose
GO:2000976 IDA regulation of transcription from RNA polymerase II promoter involved in detection of glucose

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000010813 foxa3-001 protein_coding Danio_rerio 0 292
ENST00000250448 FOXA1-001 protein_coding Homo_sapiens 0 442
ENST00000377115 FOXA2-001 protein_coding Homo_sapiens 0 1884
ENST00000419308 FOXA2-002 protein_coding Homo_sapiens 0 1816
ENST00000545425 FOXA1-002 processed_transcript Homo_sapiens 0 442

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