C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UPF1 regulator of nonsense transcripts homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000075666 Upf1-201 ENSMUSG00000058301 10090 - 8:70331522-70353273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000075666
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000075666 12.874±5.16 26.682±2.36 11.980±2.76 12.767±2.98 19.689±4.27 22.540±2.66 3.739±2.17 11.258±1.33 10.074±3.04 17.375±2.80 2.187±0.60 16.821±5.70 13.298±8.40 11.236±4.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GF CIL_0003GF_0002 CGP 8:70315775-70331592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000785 ISS chromatin
GO:0000956 IEA nuclear-transcribed mRNA catabolic process
GO:0003677 IEA DNA binding
GO:0003682 ISS chromatin binding
GO:0004004 ISS ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006260 ISS DNA replication
GO:0006281 ISS DNA repair
GO:0006449 ISS regulation of translational termination
GO:0008270 IEA zinc ion binding
GO:0009048 IMP dosage compensation by inactivation of X chromosome
GO:0035145 IEA exon-exon junction complex
GO:0044530 IEA supraspliceosomal complex
GO:0044822 IEA poly(A) RNA binding
GO:0071044 ISS histone mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000021011 upf1-201 protein_coding Danio_rerio 0 1978
ENST00000262803 UPF1-001 protein_coding Homo_sapiens 0 2939
ENST00000594504 UPF1-003 processed_transcript Homo_sapiens 0 339
ENST00000596842 UPF1-012 retained_intron Homo_sapiens 0 1568
ENST00000598209 UPF1-006 processed_transcript Homo_sapiens 0 595
ENST00000598471 UPF1-008 processed_transcript Homo_sapiens 0 542
ENST00000599848 UPF1-002 protein_coding Homo_sapiens 0 4329
ENST00000600012 UPF1-005 processed_transcript Homo_sapiens 0 473
ENST00000600310 UPF1-007 processed_transcript Homo_sapiens 0 616
ENST00000600689 UPF1-013 retained_intron Homo_sapiens 0 595
ENST00000600868 UPF1-004 processed_transcript Homo_sapiens 0 669
ENST00000601689 UPF1-010 retained_intron Homo_sapiens 2e-27 126
ENST00000601981 UPF1-011 processed_transcript Homo_sapiens 0 505

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