C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UPF1 regulator of nonsense transcripts homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000599848 UPF1-002 ENSG00000005007 9606 + 19:18832001-18868229 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartLiverLungMuscleOvaryPlacentaTestisENST00000599848
Transcript ID Adipose Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000599848 5.499±0.00 2.878±2.35 0.984±0.55 1.668±0.00 2.806±1.77 2.968±0.00 6.294±2.10 4.403±0.00 5.791±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 NAS:IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000785 IDA chromatin
GO:0000956 IMP nuclear-transcribed mRNA catabolic process
GO:0003677 IEA DNA binding
GO:0003682 IDA chromatin binding
GO:0003723 NAS RNA binding
GO:0004004 IDA ATP-dependent RNA helicase activity
GO:0004386 NAS:IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 NAS:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006200 IDA ATP catabolic process
GO:0006260 IMP DNA replication
GO:0006281 IDA DNA repair
GO:0006406 TAS mRNA export from nucleus
GO:0006449 NAS regulation of translational termination
GO:0008270 IEA zinc ion binding
GO:0009048 IEA dosage compensation by inactivation of X chromosome
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016787 IEA hydrolase activity
GO:0035145 IDA exon-exon junction complex
GO:0044530 IDA supraspliceosomal complex
GO:0044822 IDA poly(A) RNA binding
GO:0071044 IMP histone mRNA catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075666 Upf1-201 protein_coding Mus_musculus 0 4329
ENSDART00000021011 upf1-201 protein_coding Danio_rerio 0 2132

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