C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valosin containing protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493886 VCP-005 ENSG00000165280 9606 - 9:35056870-35072549 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000493886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000493886 63.610±0.00 59.252±0.00 8.641±0.00 26.492±12.57 39.373±24.57 26.798±12.52 37.406±25.59 37.512±22.71 32.425±19.62 35.168±21.53 53.319±31.26 49.823±31.83 86.504±33.49 68.775±8.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SG CIL_0005SG_0001 CGP 9:35041095-35073249
CIL_0005SF CIL_0005SF_0001 CGP 9:35056064-35080016

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030164 Vcp-001 protein_coding Mus_musculus 0 2294
ENSMUST00000120233 Vcp-rs-001 processed_pseudogene Mus_musculus 0 1925
ENSDART00000023779 vcp-001 protein_coding Danio_rerio 0 769
ENSMUST00000154541 Vcp-004 processed_transcript Mus_musculus 0 464
ENSMUST00000148182 Vcp-002 processed_transcript Mus_musculus 0 440
ENSMUST00000139127 1700022I11Rik-002 nonsense_mediated_decay Mus_musculus 0 300
ENSMUST00000139843 Vcp-003 processed_transcript Mus_musculus 0 281
ENSMUST00000154423 Vcp-005 processed_transcript Mus_musculus 5.60519e-45 187

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