C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 19a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000025146 slc6a19a-001 ENSDARG00000018621 7955 - 19:642500-656417 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000025146
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000025146 0.275±0.08 0.409±0.41 8.390±1.52 0.050±0.00 0.321±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JA CIL_0000JA_0001 CGP 19:624773-656417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005887 IEA integral to plasma membrane
GO:0006810 IEA transport
GO:0006836 IEA neurotransmitter transport
GO:0015293 IEA symporter activity
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022048 Slc6a19-001 protein_coding Mus_musculus 0 514
ENSMUST00000120322 Slc6a19-004 processed_transcript Mus_musculus 0 331
ENSMUST00000123997 Slc6a19-008 processed_transcript Mus_musculus 0 287
ENSMUST00000124406 Slc6a19-005 nonsense_mediated_decay Mus_musculus 4e-30 135
ENSMUST00000132085 Slc6a19-003 retained_intron Mus_musculus 0 374
ENSMUST00000139087 Slc6a19-006 processed_transcript Mus_musculus 6.02558e-44 182
ENST00000304460 SLC6A19-001 protein_coding Homo_sapiens 0 695
ENST00000515652 SLC6A19-002 nonsense_mediated_decay Homo_sapiens 0 302

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