C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022048 Slc6a19-001 ENSMUSG00000021565 10090 - 13:73679745-73700780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLungPlacentaTestisENSMUST00000022048
Transcript ID Colon Kidney Lung Placenta Testis
ENSMUST00000022048 0.406±0.15 196.688±4.30 1.663±1.14 0.199±0.00 0.054±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JA CIL_0000JA_0002 CGP 13:73661750-73704865

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005515 IPI protein binding
GO:0005886 ISS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0007584 IEA response to nutrient
GO:0015175 IDA neutral amino acid transmembrane transporter activity
GO:0015804 IDA neutral amino acid transport
GO:0031526 IDA brush border membrane
GO:0055085 IEA transmembrane transport
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121462 CU856173.1-201 protein_coding Danio_rerio 0 682
ENSDART00000025146 slc6a19a-001 protein_coding Danio_rerio 0 514
ENST00000253122 SLC6A8-002 protein_coding Homo_sapiens 0.00002 57
ENST00000254488 SLC6A11-001 protein_coding Homo_sapiens 0.0000000008 71
ENST00000304460 SLC6A19-001 protein_coding Homo_sapiens 0 1851
ENST00000431994 SLC6A10P-001 transcribed_unprocessed_pseudogene Homo_sapiens 0.000000005 68
ENST00000454147 SLC6A11-002 protein_coding Homo_sapiens 0.0000000005 71
ENST00000476466 SLC6A8-004 processed_transcript Homo_sapiens 0.000002 57
ENST00000515652 SLC6A19-002 nonsense_mediated_decay Homo_sapiens 0 795
ENST00000613216 AC136616.1-201 protein_coding Homo_sapiens 0.0000004 62

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