C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Dicer1, Dcr-1 homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000045881 dicer1-001 ENSDARG00000001129 7955 - 17:19250142-19293508 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000045881
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000045881 5.236±2.63 2.457±0.29 3.226±0.22 1.966±0.00 1.911±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019X CIL_00019X_0001 CGP 17:19173168-19293508

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0004386 IEA helicase activity
GO:0004518 IEA nuclease activity
GO:0004519 IEA endonuclease activity
GO:0004525 IEA ribonuclease III activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006396 IEA RNA processing
GO:0008026 IEA ATP-dependent helicase activity
GO:0016442 ISS RISC complex
GO:0016787 IEA hydrolase activity
GO:0016891 IEA endoribonuclease activity, producing 5'-phosphomonoesters
GO:0021591 IMP ventricular system development
GO:0030422 ISS production of siRNA involved in RNA interference
GO:0030423 ISS targeting of mRNA for destruction involved in RNA interference
GO:0031047 IEA gene silencing by RNA
GO:0031054 IMP pre-miRNA processing
GO:0035195 IMP gene silencing by miRNA
GO:0035196 IMP production of miRNAs involved in gene silencing by miRNA
GO:0035279 IGI mRNA cleavage involved in gene silencing by miRNA
GO:0046872 IEA metal ion binding
GO:0070883 IDA pre-miRNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041987 Dicer1-201 protein_coding Mus_musculus 0 636
ENST00000343455 DICER1-001 protein_coding Homo_sapiens 0 606
ENST00000393063 DICER1-201 protein_coding Homo_sapiens 0 606
ENST00000526495 DICER1-004 protein_coding Homo_sapiens 0 606
ENST00000527414 DICER1-006 protein_coding Homo_sapiens 0 606
ENST00000541352 DICER1-016 protein_coding Homo_sapiens 0 342
ENST00000556045 DICER1-014 protein_coding Homo_sapiens 0 606

Loading